Non-Coding RNA Search

Ss1.1-Pig4-TMW8052B08.5

Sequence:


               
               GTTTTTGTGGGGTAGTTAATTGGTTGTTTGAAAATAATAACTAAGAAATTAAACTAAAGG
TGCTTGAGGGTAAAATTAATATGCGACATATGTCCTCATAAATGTGAGCCCTTAATAAAT
GCTTCGATGTAATGTTCTTTTTGTTCACAGTAAAGTTCTGTAGTGCTAGCCAGATATTTC
AAAATGCTCTAAGAAAAGCTTGTTGGGGGGAGGGAAAATGTTTTTTCTTGTGATAAATGA
ACTTTGGTTACCAAGGGTATTTTGCATGATGCTGCTGCTATTTTAACTTTCAGTTTGTTT
TTCTCTTACTGTAGAGTATAGTCCATTGAAAAGTTAACTGAGTGACATTATTGTTATGTG
AGAATCTGAACCTTGCAGTGTAATGCACTTAAGTCATCTTTTAAAATGTCATTAAACTAC
TCTGAATATACTGTGCAATGTAAATGCTGAATGATTGGATCAGGTAAATGGTAAAATGGG
AATTAATGGATTTTATACAGATTCGTGCTTTTGCCTGAAAACCTATGTACAGATATTTTA
AGTACATAAATCAGATTTGACACATTTATTTTTTGAAGAGTACATATATGTTCTCAATGA
AGATTCATCCTAGGTTTCCTCTTTGTTCCTTTGAATAGTAGCACATACAACTCCAGATTT
TCTGCTGCTGCTGCCGCTTTTGTTCCCTCCGTTTGAAATGGTGTGATCATTTGACCAAAA
TTTCCATCCAGTTAGATGAGGGTTTTACAATAATCTGAACAAATAGGAAACCTTGAATCT
ATATGTATGCACATGAATACTTGATTGTGAATAATCAAAATTGTTTTTATACAGCCTCAT
TAGTGAAAACCGTTAGTGTAGTAAATCAGGTATTTCATTATAGAGTAATATGGTTGCAGA
GTTTATTTATGCTTTTAAAAATTATTTTCGGGAGTAAACAGTATTTGAAGAAAGGGTAAA
AACAATGAATGTGTAACTAATTATAGTGAATAATTCTGCCGAAGGTGGGAAGTATGCAGA
TATTTTTAATGGTAAAATGCATTTGTTCTGTTTTTGAACATGCCAAGTATTGGTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTGTGGGGTAGTTAATTGGTTGTTTGAAAATAATAACTAAGAAATTAAACTAAAGG
TGCTTGAGGGTAAAATTAATATGCGACATATGTCCTCATAAATGTGAGCCCTTAATAAAT
GCTTCGATGTAATGTTCTTTTTGTTCACAGTAAAGTTCTGTAGTGCTAGCCAGATATTTC
AAAATGCTCTAAGAAAAGCTTGTTGGGGGGAGGGAAAATGTTTTTTCTTGTGATAAATGA
ACTTTGGTTACCAAGGGTATTTTGCATGATGCTGCTGCTATTTTAACTTTCAGTTTGTTT
TTCTCTTACTGTAGAGTATAGTCCATTGAAAAGTTAACTGAGTGACATTATTGTTATGTG
AGAATCTGAACCTTGCAGTGTAATGCACTTAAGTCATCTTTTAAAATGTCATTAAACTAC
TCTGAATATACTGTGCAATGTAAATGCTGAATGATTGGATCAGGTAAATGGTAAAATGGG
AATTAATGGATTTTATACAGATTCGTGCTTTTGCCTGAAAACCTATGTACAGATATTTTA
AGTACATAAATCAGATTTGACACATTTATTTTTTGAAGAGTACATATATGTTCTCAATGA
AGATTCATCCTAGGTTTCCTCTTTGTTCCTTTGAATAGTAGCACATACAACTCCAGATTT
TCTGCTGCTGCTGCCGCTTTTGTTCCCTCCGTTTGAAATGGTGTGATCATTTGACCAAAA
TTTCCATCCAGTTAGATGAGGGTTTTACAATAATCTGAACAAATAGGAAACCTTGAATCT
ATATGTATGCACATGAATACTTGATTGTGAATAATCAAAATTGTTTTTATACAGCCTCAT
TAGTGAAAACCGTTAGTGTAGTAAATCAGGTATTTCATTATAGAGTAATATGGTTGCAGA
GTTTATTTATGCTTTTAAAAATTATTTTCGGGAGTAAACAGTATTTGAAGAAAGGGTAAA
AACAATGAATGTGTAACTAATTATAGTGAATAATTCTGCCGAAGGTGGGAAGTATGCAGA
TATTTTTAATGGTAAAATGCATTTGTTCTGTTTTTGAACATGCCAAGTATTGGTGTGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               421-538, + strand, RNAz p=0.732212

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-538, + strand, RNAz p=0.732212

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1025, gnl|bosTau2|chr4 (17479836-17480847)
               

               
               1-1025, gnl|Hg17|chr7 (81223736-81222706)
               

               
               1-1025, gnl|Mm7|chr5 (15379062-15380094)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1025, gnl|bosTau2|chr4 (17479836-17480847)
               

               
               1-1025, gnl|Hg17|chr7 (81223736-81222706)
               

               
               1-1025, gnl|Mm7|chr5 (15379062-15380094)

	1-1025, gnl\|bosTau2\|chr4 (17479836-17480847)
	1-1025, gnl\|Hg17\|chr7 (81223736-81222706)
	1-1025, gnl\|Mm7\|chr5 (15379062-15380094)