Non-Coding RNA Search

Ss1.1-Pig4-TMW8052C24.5

Sequence:


               
               TACATTTGTGCAAAGAGCGATTTAAGAAGATTCAGAAGCTCTGGCACCAGCACAGTATCA
CAGAGGAAATTGGACATGCACAGGAAGCAAATCAGACACTGGTTGGCATTGACTGGCAAC
ATTTATAATTACTTCACTACCAAAACACAAACTTGGATTTTGTAACCCAGTCGGCTTTTC
AAGAAAGAGAATAGGAAATAGGTTCTACTGAATTTGGAAATAAAGTCTTTATTTAAGCTT
TTCTTCCCAGTTTTATTTTTATAGTTTCTGGCTCCAGGGATTGATGAAAATCATCTGTCA
GCAGATTTTCTTGCATCATTTGCTCGTGTCCCTCAAACTTCTTGAATTTTAGAATCCAGC
AAGGAGCTTCTCTTCCTGGGCTGGACACAGCCCCTCTGTGGGCCTCTGACTGCGTTTGGC
TGTTCCCGGTCGTCTGAGCCGTGTCTACTTCTTGAGTACCCGGGACTCCAGGCCTGAAGC
TGATTCAACAGCAGCAGGAAACAAAGTCTCTGGTCTCTTGGGGTCACACTTCTTAGTCCC
TCTCAGTGACTGTCAACGTTGGGACTGGGTCAGTGTCCCCACAGCTGACGGGACCCTACC
TCTAAGCAAAGCAGTGGACTTTGAAAGTGGCATTTCCTTGCCTCCAGAAGCTGTGAGGGG
GGAGGGTTGGGGGGGGGGACTCGTGCCGGTGGAGCCTGTGCATGGAAGGGGAGGAGGTGG
TGTCTCTCTGTGCTGGATGATTTTCAGGGCTTTGTAAGTTTGGATTTTTGTAGGATTTTT
GGCTTTGAGGGGAAAAAACTCATTTCAAAGGGCTTTTTGAAAACTTAGAGTATCATAATT
TTTCAGACAATGTATTCTCTTATTTCTGAGACTAAGTTGAGAGAGTGTGTGCATCTAGAA
TCAAACACTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACATTTGTGCAAAGAGCGATTTAAGAAGATTCAGAAGCTCTGGCACCAGCACAGTATCA
CAGAGGAAATTGGACATGCACAGGAAGCAAATCAGACACTGGTTGGCATTGACTGGCAAC
ATTTATAATTACTTCACTACCAAAACACAAACTTGGATTTTGTAACCCAGTCGGCTTTTC
AAGAAAGAGAATAGGAAATAGGTTCTACTGAATTTGGAAATAAAGTCTTTATTTAAGCTT
TTCTTCCCAGTTTTATTTTTATAGTTTCTGGCTCCAGGGATTGATGAAAATCATCTGTCA
GCAGATTTTCTTGCATCATTTGCTCGTGTCCCTCAAACTTCTTGAATTTTAGAATCCAGC
AAGGAGCTTCTCTTCCTGGGCTGGACACAGCCCCTCTGTGGGCCTCTGACTGCGTTTGGC
TGTTCCCGGTCGTCTGAGCCGTGTCTACTTCTTGAGTACCCGGGACTCCAGGCCTGAAGC
TGATTCAACAGCAGCAGGAAACAAAGTCTCTGGTCTCTTGGGGTCACACTTCTTAGTCCC
TCTCAGTGACTGTCAACGTTGGGACTGGGTCAGTGTCCCCACAGCTGACGGGACCCTACC
TCTAAGCAAAGCAGTGGACTTTGAAAGTGGCATTTCCTTGCCTCCAGAAGCTGTGAGGGG
GGAGGGTTGGGGGGGGGGACTCGTGCCGGTGGAGCCTGTGCATGGAAGGGGAGGAGGTGG
TGTCTCTCTGTGCTGGATGATTTTCAGGGCTTTGTAAGTTTGGATTTTTGTAGGATTTTT
GGCTTTGAGGGGAAAAAACTCATTTCAAAGGGCTTTTTGAAAACTTAGAGTATCATAATT
TTTCAGACAATGTATTCTCTTATTTCTGAGACTAAGTTGAGAGAGTGTGTGCATCTAGAA
TCAAACACTAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               197-343, - strand, RNAz p=0.986037

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-343, - strand, RNAz p=0.986037

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-766, gnl|bosTau2|chr23 (17041796-17042567)
               

               
               1-766, gnl|Hg17|chr6 (42766762-42767500)
               

               
               1-766, gnl|Mm7|chr17 (45061631-45060968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-766, gnl|bosTau2|chr23 (17041796-17042567)
               

               
               1-766, gnl|Hg17|chr6 (42766762-42767500)
               

               
               1-766, gnl|Mm7|chr17 (45061631-45060968)

	1-766, gnl\|bosTau2\|chr23 (17041796-17042567)
	1-766, gnl\|Hg17\|chr6 (42766762-42767500)
	1-766, gnl\|Mm7\|chr17 (45061631-45060968)