Non-Coding RNA Search

Ss1.1-Pig4-TMW8052D24.5

Sequence:


               
               GGAAGCTGGACTGCCAGGGCTGGAATCTTGTTCTGCTTCTTCCTGGTGTGTGGCTGAGGG
CAACTTGCCTGACCTCTCTGTGCCCCAGTTTTCCCATCTGCAAGGAGCAGGTGATAATAG
TGCCTCTTTCAAAAAGCTATTGTGAAGATTAAATTGATTAATATGATAAAGCACTTAGGA
CAGTGCCTGGCACGTAGCACATAAGCAGTCAGTATGCATCTCAGCTGTTTTGACAGGGTT
TTTCCTCCTGAGACCAATTCTGACACCAACTGAGTGTCCTGCTTGATTCTGACACTCATC
ATGCAGAGTTAGCGCCAGACTCCACGGGGTTAGGGCCCCAGTCCCTCAAGACTGCCCCCA
CTTCAGAGTTACAGTCACAAGTACCGGGTTCCCAGGGTACCTGAATTTCTGTTCCACTTC
AGACAAAGTTGGGGGTTCCCAACCCCCCTCCCCGCTTCAGGTTTAATAATTTCCTAAAGT
GGCTCACAAAGCTCAGAAACAGGGTGAGGAGATGCGCGGGGCAAGGTGCTTCCCTCCCCA
CACCCTGTGCACCGCCCTCCCAGGACCCCCAGGACCCACCAGAGATGCTCTGTCTGCTGC
TTGGGGCTTTTATGGAGTTTCCCCTATGGAGGCATGGTTAAGTCACAGGCGTGGGGGGTG
GGGCTCAACTCTGGCTTCTCTCCCCTCCCCAGGAGGTGGAGGCTGGGCTGAAAATTCCCA
GCTTCTAATCAAGGCTTGGTCTTTATGGTGACCAGCCCCCATCCTGAAGGTATCTAGGGA
CCTTATTGAAATAGAAGATGCTGCTGTCGTCCTTATCCATCAGGAAATTCCTAGAGTCTT
AAGGGGCTCTGGGCCAGGAACTAGGGATAAAAACCAAATATCTTTCTGTGATGGCACAGC
ATCTGTCCCCTATTGGGAGCTTAAAATGTTAGTAGGATTAGAACTCCTTTTATCCAGCAT
AGCTGGGACATGAGGTGCTGTGAGGCCGGCCTGTAGAGCACAGTGGAAGAGGGTGGGCTT
TGGAGTTGGACTTGGATTTGATTTAGAGGTCTAGACTCTTAGTCATTCTCACACTGAACA
ACTGCCTGAACCTCCTAAGCCTCATTTTTTTAAAAAAAAATCAGTAAAATAGAGAGTATG
ATGCTTGCTTTATACAGCTCCTGTACACAATAGAAATAGCAGATATAAAAAGAACCTGGC
ATACTCGGTATTAGTACATGACAAATTATGTAGTACTTTCTACTGACGACGCAGCCTTTT
CACGAGCAAAGAGCTTATTTTCATAGCACCAGTTTCTTGTCTCCTGTTTTTGTTTTCACT
ATCACACTCTTCCAAAGCAATGCTGGATTGCTGTTATTACACCACTGTGGTAAAAAATAG
AGAAAAATGACCTTTATTTCATTGTATGTCTTAGGGTTCCCAAATCGCCCTTTTTCTTTT
TATAGCCAACAGAAGCATACTGTTGGATTTTGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGCTGGACTGCCAGGGCTGGAATCTTGTTCTGCTTCTTCCTGGTGTGTGGCTGAGGG
CAACTTGCCTGACCTCTCTGTGCCCCAGTTTTCCCATCTGCAAGGAGCAGGTGATAATAG
TGCCTCTTTCAAAAAGCTATTGTGAAGATTAAATTGATTAATATGATAAAGCACTTAGGA
CAGTGCCTGGCACGTAGCACATAAGCAGTCAGTATGCATCTCAGCTGTTTTGACAGGGTT
TTTCCTCCTGAGACCAATTCTGACACCAACTGAGTGTCCTGCTTGATTCTGACACTCATC
ATGCAGAGTTAGCGCCAGACTCCACGGGGTTAGGGCCCCAGTCCCTCAAGACTGCCCCCA
CTTCAGAGTTACAGTCACAAGTACCGGGTTCCCAGGGTACCTGAATTTCTGTTCCACTTC
AGACAAAGTTGGGGGTTCCCAACCCCCCTCCCCGCTTCAGGTTTAATAATTTCCTAAAGT
GGCTCACAAAGCTCAGAAACAGGGTGAGGAGATGCGCGGGGCAAGGTGCTTCCCTCCCCA
CACCCTGTGCACCGCCCTCCCAGGACCCCCAGGACCCACCAGAGATGCTCTGTCTGCTGC
TTGGGGCTTTTATGGAGTTTCCCCTATGGAGGCATGGTTAAGTCACAGGCGTGGGGGGTG
GGGCTCAACTCTGGCTTCTCTCCCCTCCCCAGGAGGTGGAGGCTGGGCTGAAAATTCCCA
GCTTCTAATCAAGGCTTGGTCTTTATGGTGACCAGCCCCCATCCTGAAGGTATCTAGGGA
CCTTATTGAAATAGAAGATGCTGCTGTCGTCCTTATCCATCAGGAAATTCCTAGAGTCTT
AAGGGGCTCTGGGCCAGGAACTAGGGATAAAAACCAAATATCTTTCTGTGATGGCACAGC
ATCTGTCCCCTATTGGGAGCTTAAAATGTTAGTAGGATTAGAACTCCTTTTATCCAGCAT
AGCTGGGACATGAGGTGCTGTGAGGCCGGCCTGTAGAGCACAGTGGAAGAGGGTGGGCTT
TGGAGTTGGACTTGGATTTGATTTAGAGGTCTAGACTCTTAGTCATTCTCACACTGAACA
ACTGCCTGAACCTCCTAAGCCTCATTTTTTTAAAAAAAAATCAGTAAAATAGAGAGTATG
ATGCTTGCTTTATACAGCTCCTGTACACAATAGAAATAGCAGATATAAAAAGAACCTGGC
ATACTCGGTATTAGTACATGACAAATTATGTAGTACTTTCTACTGACGACGCAGCCTTTT
CACGAGCAAAGAGCTTATTTTCATAGCACCAGTTTCTTGTCTCCTGTTTTTGTTTTCACT
ATCACACTCTTCCAAAGCAATGCTGGATTGCTGTTATTACACCACTGTGGTAAAAAATAG
AGAAAAATGACCTTTATTTCATTGTATGTCTTAGGGTTCCCAAATCGCCCTTTTTCTTTT
TATAGCCAACAGAAGCATACTGTTGGATTTTGGTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-197, - strand, RNAz p=0.56472
               

               
               283-386, - strand, RNAz p=0.665379

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.56472
               

               
               283-386, - strand, RNAz p=0.665379

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-234, gnl|bosTau2|chr6 (21618520-21618288)
               

               
               1-234, gnl|Hg17|chr4 (25089463-25089699)
               


               
               240-501, gnl|bosTau2|chr6 (21618253-21618010)
               

               
               240-501, gnl|hg17|chr4 (25089720-25090376)
               

               
               240-501, gnl|Hg17|chr4 (25089733-25090012)
               

               
               240-501, gnl|rheMac2|chr5 (20170174-20170837)
               


               
               660-1476, gnl|bosTau2|chr6 (21617355-21616546)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-234, gnl|bosTau2|chr6 (21618520-21618288)
               

               
               1-234, gnl|Hg17|chr4 (25089463-25089699)
               


               
               240-501, gnl|bosTau2|chr6 (21618253-21618010)
               

               
               240-501, gnl|hg17|chr4 (25089720-25090376)
               

               
               240-501, gnl|Hg17|chr4 (25089733-25090012)
               

               
               240-501, gnl|rheMac2|chr5 (20170174-20170837)
               


               
               660-1476, gnl|bosTau2|chr6 (21617355-21616546)

	79-197, - strand, RNAz p=0.56472
	283-386, - strand, RNAz p=0.665379

	1-234, gnl\|bosTau2\|chr6 (21618520-21618288)
	1-234, gnl\|Hg17\|chr4 (25089463-25089699)

	240-501, gnl\|bosTau2\|chr6 (21618253-21618010)
	240-501, gnl\|hg17\|chr4 (25089720-25090376)
	240-501, gnl\|Hg17\|chr4 (25089733-25090012)
	240-501, gnl\|rheMac2\|chr5 (20170174-20170837)

	660-1476, gnl\|bosTau2\|chr6 (21617355-21616546)