Non-Coding RNA Search

Ss1.1-Pig4-TMW8052J16.5

Sequence:


               
               CTACGATGTCAAAAAGTTCCTTCAGCTCCCGTATTTGAAAGACTCTGATTCCAGGCAGGC
TTTAAAAGGCTTTCTTATTTGGGGGTGTGGATGACGGAACTTCTCCCAGAAGTTCTCTGG
GGACCCAGGGGACACTTCTCCGCAACCCTGAGGCTAAACTTAGACAGATCCTGGAGGCCA
GGTGGAGGCAGGGGGCCTTAGGAAGTGCCTTGTGAATTTCTGTGAGCTGCTGGTTTTCTT
ACGGGGACACACTGGCGTGTACTCCTCCCTTTGCCTTAGTGTAAACTGAGACGCGGGCCT
GACTCTGCTTTTGGGGTCTTACCCTCGCTTCCAAAATTTGGTCTTATTTAAAACCCAGAA
CACATTTGGCCCCCAAGTGCCTTTCCCTTGGATGTTTCAAAAATTCTGGTTAATTGAAGA
GAAATGAAATTGGGTTTTGATTCATTTATACCTAACTCTTCTTTTAAAAATCAAAACCCA
TATTTTGAGGACATCTTTGATGTCCAGGCAGAATTTTGAGCCTCTTAATGAGTTTTCTGG
GAGGCTTTTTTTTCTTCTTCTTCTTAAAACAGGAAGTGGTGCTATGCTACGGGCAAACAC
AGTCAACCCTGAAAGGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACGATGTCAAAAAGTTCCTTCAGCTCCCGTATTTGAAAGACTCTGATTCCAGGCAGGC
TTTAAAAGGCTTTCTTATTTGGGGGTGTGGATGACGGAACTTCTCCCAGAAGTTCTCTGG
GGACCCAGGGGACACTTCTCCGCAACCCTGAGGCTAAACTTAGACAGATCCTGGAGGCCA
GGTGGAGGCAGGGGGCCTTAGGAAGTGCCTTGTGAATTTCTGTGAGCTGCTGGTTTTCTT
ACGGGGACACACTGGCGTGTACTCCTCCCTTTGCCTTAGTGTAAACTGAGACGCGGGCCT
GACTCTGCTTTTGGGGTCTTACCCTCGCTTCCAAAATTTGGTCTTATTTAAAACCCAGAA
CACATTTGGCCCCCAAGTGCCTTTCCCTTGGATGTTTCAAAAATTCTGGTTAATTGAAGA
GAAATGAAATTGGGTTTTGATTCATTTATACCTAACTCTTCTTTTAAAAATCAAAACCCA
TATTTTGAGGACATCTTTGATGTCCAGGCAGAATTTTGAGCCTCTTAATGAGTTTTCTGG
GAGGCTTTTTTTTCTTCTTCTTCTTAAAACAGGAAGTGGTGCTATGCTACGGGCAAACAC
AGTCAACCCTGAAAGGCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               458-622, + strand, RNAz p=0.84022

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-622, + strand, RNAz p=0.84022

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-622, gnl|bosTau2|chr10 (46887180-46886552)
               

               
               2-622, gnl|Hg17|chr11 (128079222-128079826)
               

               
               2-622, gnl|Mm7|chr9 (32433359-32432762)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-622, gnl|bosTau2|chr10 (46887180-46886552)
               

               
               2-622, gnl|Hg17|chr11 (128079222-128079826)
               

               
               2-622, gnl|Mm7|chr9 (32433359-32432762)

	2-622, gnl\|bosTau2\|chr10 (46887180-46886552)
	2-622, gnl\|Hg17\|chr11 (128079222-128079826)
	2-622, gnl\|Mm7\|chr9 (32433359-32432762)