Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L01.5

Sequence:


               
               CCACGCGTCCGGGGAGGCCCTTAATTCAATACAGTTGGTGTCTTTAGAAGGGGAGACCTG
GGAGATGGCCATGTGGGAAGGGGACAGAGACTGCAGTGCTGGGGCTACAGCCCATGGCCT
GGCTAGGATTGCTAGCAAACCACCAGGAGCTGGGAAGAGGCAAAGAGGGATTCTCCTGGG
TTTCAGAGGGAACTGAGCCCCTCTGACACCTTGGTTTTGGACTTTTAGCCTCTGAAACTG
TGAGACAAAAAAATTCTGTTGTTTTGAGCCACCCAGATTGTGGTACTTGGTAACAGCAGC
CCTAGAAAACCAAACAATACCTTAGGAAACTCTTTTAAGAATGTTTCATAATCTTAATTT
GTAAAAAAATAATAATTATTTTGGAGAATTAAAGAATCATAAAATGGAAAAGAATAAAAT
AATCTTGGACCAATACTGTTCATGAGTCCAGAATTCTGTGATAGACAAAGAAAAAAGGTA
AGAACATATGGATTTTTCAGTCATATGTAACTGGCTTCAAATTCTTGCCAAGTCACCTAA
TAGCTGTGTGAACTTAAGTTAAAACATGTTAAGAATTTCCCGCTTTGGTGCAATGGGATT
GGCGGCATTGTGGGAGCACTGGAACACAGGTTCGATCCCCAGCCCAGAACCATGGGTTAA
GGATCTGGCCTTACCACAGCTGCAGCTTAAGTAGCAACCTTGGCTCAGATCTGATCTCTG
GCCCAGGAACTCCATGTGCCTCAGGGTGGACAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGGGAGGCCCTTAATTCAATACAGTTGGTGTCTTTAGAAGGGGAGACCTG
GGAGATGGCCATGTGGGAAGGGGACAGAGACTGCAGTGCTGGGGCTACAGCCCATGGCCT
GGCTAGGATTGCTAGCAAACCACCAGGAGCTGGGAAGAGGCAAAGAGGGATTCTCCTGGG
TTTCAGAGGGAACTGAGCCCCTCTGACACCTTGGTTTTGGACTTTTAGCCTCTGAAACTG
TGAGACAAAAAAATTCTGTTGTTTTGAGCCACCCAGATTGTGGTACTTGGTAACAGCAGC
CCTAGAAAACCAAACAATACCTTAGGAAACTCTTTTAAGAATGTTTCATAATCTTAATTT
GTAAAAAAATAATAATTATTTTGGAGAATTAAAGAATCATAAAATGGAAAAGAATAAAAT
AATCTTGGACCAATACTGTTCATGAGTCCAGAATTCTGTGATAGACAAAGAAAAAAGGTA
AGAACATATGGATTTTTCAGTCATATGTAACTGGCTTCAAATTCTTGCCAAGTCACCTAA
TAGCTGTGTGAACTTAAGTTAAAACATGTTAAGAATTTCCCGCTTTGGTGCAATGGGATT
GGCGGCATTGTGGGAGCACTGGAACACAGGTTCGATCCCCAGCCCAGAACCATGGGTTAA
GGATCTGGCCTTACCACAGCTGCAGCTTAAGTAGCAACCTTGGCTCAGATCTGATCTCTG
GCCCAGGAACTCCATGTGCCTCAGGGTGGACAGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               60-215, - strand, RNAz p=0.97581

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-215, - strand, RNAz p=0.97581

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               60-394, gnl|bosTau2|chr3 (68512864-68513194)
               

               
               60-394, gnl|hg17|chr1 (45335643-45336147)
               

               
               60-394, gnl|Hg17|chr1 (45335847-45336196)
               

               
               60-394, gnl|panTro1|chr1_random (65341059-65340555)
               

               
               60-394, gnl|rheMac2|chr1 (48135249-48135745)
               


               
               408-573, gnl|bosTau2|chr14 (17454436-17454599)
               

               
               408-573, gnl|Hg17|chr8 (64203839-64203672)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-394, gnl|bosTau2|chr3 (68512864-68513194)
               

               
               60-394, gnl|hg17|chr1 (45335643-45336147)
               

               
               60-394, gnl|Hg17|chr1 (45335847-45336196)
               

               
               60-394, gnl|panTro1|chr1_random (65341059-65340555)
               

               
               60-394, gnl|rheMac2|chr1 (48135249-48135745)
               


               
               408-573, gnl|bosTau2|chr14 (17454436-17454599)
               

               
               408-573, gnl|Hg17|chr8 (64203839-64203672)

	60-394, gnl\|bosTau2\|chr3 (68512864-68513194)
	60-394, gnl\|hg17\|chr1 (45335643-45336147)
	60-394, gnl\|Hg17\|chr1 (45335847-45336196)
	60-394, gnl\|panTro1\|chr1_random (65341059-65340555)
	60-394, gnl\|rheMac2\|chr1 (48135249-48135745)

	408-573, gnl\|bosTau2\|chr14 (17454436-17454599)
	408-573, gnl\|Hg17\|chr8 (64203839-64203672)