Non-Coding RNA Search

Ss1.1-Pig4-TMW8052L21.5

Sequence:


               
               TTAAATGAGTTTTTCAAAAGAAGTTGTAGGATTTCTTTCTCTGGTTTGAAGATAGACTCA
TACAAATGATTCTGTTACTTTTTTTAAAAAGGTATTTGACTTACTAGCCGTTGCCAGAAA
AGGTATCATATTTGCTTGACTTGTTATTTATTCCAAAAAGTAAAACTTATTTAGCACACC
AGTAAGCCAAGTACTTGGGTTTTCAGAATACTTCCAAAATCACATTTTTAAGTTTTTTTG
GCTTGTTTTGTTTTTAAAGGGAATTCAAGTTTGGACCAATGCTAAGGAATGCTTTAGCAA
GATGTAATCCTGTGTAATGAATTTCTCTTCAATCAAAGTGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAATGAGTTTTTCAAAAGAAGTTGTAGGATTTCTTTCTCTGGTTTGAAGATAGACTCA
TACAAATGATTCTGTTACTTTTTTTAAAAAGGTATTTGACTTACTAGCCGTTGCCAGAAA
AGGTATCATATTTGCTTGACTTGTTATTTATTCCAAAAAGTAAAACTTATTTAGCACACC
AGTAAGCCAAGTACTTGGGTTTTCAGAATACTTCCAAAATCACATTTTTAAGTTTTTTTG
GCTTGTTTTGTTTTTAAAGGGAATTCAAGTTTGGACCAATGCTAAGGAATGCTTTAGCAA
GATGTAATCCTGTGTAATGAATTTCTCTTCAATCAAAGTGCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-348, - strand, RNAz p=0.878419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-348, - strand, RNAz p=0.878419

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-348, gnl|bosTau2|chr1 (37510278-37510640)
               

               
               2-348, gnl|Hg17|chr3 (126649610-126649272)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-348, gnl|bosTau2|chr1 (37510278-37510640)
               

               
               2-348, gnl|Hg17|chr3 (126649610-126649272)

	2-348, gnl\|bosTau2\|chr1 (37510278-37510640)
	2-348, gnl\|Hg17\|chr3 (126649610-126649272)