Non-Coding RNA Search

Ss1.1-Pig4-TMW8052P11.5

Sequence:


               
               GAAACTTTTGTTTTGCCAGAGGTGGCCGCCGAGGCAGCCTGACCCACTCTCCACCTCCTG
CTCTGGGTGTCACACTACCGCTTCCTCTGTGCCAGGGGCGGGGGGAGGGGGAGGGGAAGA
ATTACCGTCTGTATCTCGAGGTGCTCTTCCAATCCCCAAGCCCTCTGGTCCTGACCTCCG
ACCTCCTACCACGACCCTTTAGACCCTCCACCGCCTGGGTTTCCAGCAGTATAAGGGGGT
TGGGGCCCTTTCAGAAGTCAGAAGAGATTTTCTGAGGTGGGGGGGGAAGGGAGTGAAGCG
CATCCATCCGCAAAGGGCTCAGAACGCATCTATCCCCACAAAACTGGGCTAGAGGAATCC
GGAGAGGGATGCTCCTCTCTGCCCCCTGCAGCTTTCCCTCCGCTCTCCTCCCCAGCTTTG
TCCCCTTTGGGTTTTCCTTTCTTTCTCCTTATCGCTCTCCCCCTAATCACACTCTACCCA
CAAAGGCAGAATACTGTTACACTAGGAGGCTCAGAAATTTCAATCACATCTCTTACTAAT
TGAGCCCAACCTATAAACAAACACAAAACACATATATTGAGAGACAAAATAAAGCGATAG
AAAGAGATCGTGAGAGAGGAACGAGATAGGCGACCAACACAGAGGATACAATACTAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACTTTTGTTTTGCCAGAGGTGGCCGCCGAGGCAGCCTGACCCACTCTCCACCTCCTG
CTCTGGGTGTCACACTACCGCTTCCTCTGTGCCAGGGGCGGGGGGAGGGGGAGGGGAAGA
ATTACCGTCTGTATCTCGAGGTGCTCTTCCAATCCCCAAGCCCTCTGGTCCTGACCTCCG
ACCTCCTACCACGACCCTTTAGACCCTCCACCGCCTGGGTTTCCAGCAGTATAAGGGGGT
TGGGGCCCTTTCAGAAGTCAGAAGAGATTTTCTGAGGTGGGGGGGGAAGGGAGTGAAGCG
CATCCATCCGCAAAGGGCTCAGAACGCATCTATCCCCACAAAACTGGGCTAGAGGAATCC
GGAGAGGGATGCTCCTCTCTGCCCCCTGCAGCTTTCCCTCCGCTCTCCTCCCCAGCTTTG
TCCCCTTTGGGTTTTCCTTTCTTTCTCCTTATCGCTCTCCCCCTAATCACACTCTACCCA
CAAAGGCAGAATACTGTTACACTAGGAGGCTCAGAAATTTCAATCACATCTCTTACTAAT
TGAGCCCAACCTATAAACAAACACAAAACACATATATTGAGAGACAAAATAAAGCGATAG
AAAGAGATCGTGAGAGAGGAACGAGATAGGCGACCAACACAGAGGATACAATACTAAAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-157, + strand, RNAz p=0.793223
               

               
               80-180, - strand, RNAz p=0.602647

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-157, + strand, RNAz p=0.793223
               

               
               80-180, - strand, RNAz p=0.602647

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               49-169, + strand, RNAmicro p=0.996472

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               49-169, + strand, RNAmicro p=0.996472

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-223, gnl|bosTau2|chr3 (10543825-10544033)
               

               
               2-223, gnl|canFam2|chr7 (44719205-44718666)
               

               
               2-223, gnl|echTel1|scaffold_299524 (4646-5238)
               

               
               2-223, gnl|hg17|chr1 (152858781-152859356)
               

               
               2-223, gnl|Hg17|chr1 (152859155-152858931)
               

               
               2-223, gnl|loxAfr1|scaffold_59051 (2143-1572)
               

               
               2-223, gnl|mm7|chr3 (88651602-88651060)
               

               
               2-223, gnl|Mm7|chr3 (88651239-88651439)
               

               
               2-223, gnl|monDom2|scaffold_59 (1476660-1475963)
               

               
               2-223, gnl|oryCun1|scaffold_195642 (9123-8513)
               

               
               2-223, gnl|panTro1|chr1 (134803657-134804232)
               

               
               2-223, gnl|rheMac2|chr1 (134673804-134674400)
               

               
               2-223, gnl|rn3|chr2 (180602821-180602318)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-223, gnl|bosTau2|chr3 (10543825-10544033)
               

               
               2-223, gnl|canFam2|chr7 (44719205-44718666)
               

               
               2-223, gnl|echTel1|scaffold_299524 (4646-5238)
               

               
               2-223, gnl|hg17|chr1 (152858781-152859356)
               

               
               2-223, gnl|Hg17|chr1 (152859155-152858931)
               

               
               2-223, gnl|loxAfr1|scaffold_59051 (2143-1572)
               

               
               2-223, gnl|mm7|chr3 (88651602-88651060)
               

               
               2-223, gnl|Mm7|chr3 (88651239-88651439)
               

               
               2-223, gnl|monDom2|scaffold_59 (1476660-1475963)
               

               
               2-223, gnl|oryCun1|scaffold_195642 (9123-8513)
               

               
               2-223, gnl|panTro1|chr1 (134803657-134804232)
               

               
               2-223, gnl|rheMac2|chr1 (134673804-134674400)
               

               
               2-223, gnl|rn3|chr2 (180602821-180602318)

	2-157, + strand, RNAz p=0.793223
	80-180, - strand, RNAz p=0.602647

	2-223, gnl\|bosTau2\|chr3 (10543825-10544033)
	2-223, gnl\|canFam2\|chr7 (44719205-44718666)
	2-223, gnl\|echTel1\|scaffold_299524 (4646-5238)
	2-223, gnl\|hg17\|chr1 (152858781-152859356)
	2-223, gnl\|Hg17\|chr1 (152859155-152858931)
	2-223, gnl\|loxAfr1\|scaffold_59051 (2143-1572)
	2-223, gnl\|mm7\|chr3 (88651602-88651060)
	2-223, gnl\|Mm7\|chr3 (88651239-88651439)
	2-223, gnl\|monDom2\|scaffold_59 (1476660-1475963)
	2-223, gnl\|oryCun1\|scaffold_195642 (9123-8513)
	2-223, gnl\|panTro1\|chr1 (134803657-134804232)
	2-223, gnl\|rheMac2\|chr1 (134673804-134674400)
	2-223, gnl\|rn3\|chr2 (180602821-180602318)