Non-Coding RNA Search

Ss1.1-Pig4-TMW8053A08.3

Sequence:


               
               CTCAAGGCACATATGCATAGTAGTGCTCATGACTGCTGCTTGAATGAACACATACTAGGT
GCTCATGAGCTGTTACATGGACACAGTAGATGCTAGTTAATTTGCGGGCAAATGGATACA
TAGGGGAGTTGTATGAATGGACACTTACTAGGTACTCATGACTGTTGCCTGAATAGATAG
AGCAGGTGCTCCTGAGCTGTTGGGTGATACATGAAAGGCCAGTAGTCCTGAAAGGCAGCT
ATTTGGAGGTGACCTTCCCTGCCCTCACCGCACCCTAGTTTCCCTCCTGTGGATAATGTG
GAGTGAGGCCGGGTTAAACATTAGCCGGCAGATGGTCCATGGGGGGAAGGCCAGCCATGG
GACCTAGCACCTTCTAGGAGGGGGCTCTTAAGGGCCGACTCTCTGGGTCCCAACACCAGC
CAGGGTGTGGGGAGAGGCAGAGGCTGAGGGCTGCAGAGCGCCCCCTTCCGGCGTCTGGGA
TTGCAGTGATTCAGCTTCCATTGCCACCCAGCAGCCTGTGGCCTCACTTGGTCCCACCTT
GGAGTCACCTGACTCCGGCCCAGGGGGAATACAGGTGTATGGAAAAAAGGTACACAAGGG
GCTAGTTTTATATGCTTATGGGGAGTTCCCGTCGTGGCTCAGCGAGCTGTGACGAAGGCC
AGCAGCTACAGCTCTGTTTCTCTGATTTGACCCCTATCCTGGAAATCTCCATACGCTGCC
TGCCGGTGCGTCCTCGAAAAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAGGCACATATGCATAGTAGTGCTCATGACTGCTGCTTGAATGAACACATACTAGGT
GCTCATGAGCTGTTACATGGACACAGTAGATGCTAGTTAATTTGCGGGCAAATGGATACA
TAGGGGAGTTGTATGAATGGACACTTACTAGGTACTCATGACTGTTGCCTGAATAGATAG
AGCAGGTGCTCCTGAGCTGTTGGGTGATACATGAAAGGCCAGTAGTCCTGAAAGGCAGCT
ATTTGGAGGTGACCTTCCCTGCCCTCACCGCACCCTAGTTTCCCTCCTGTGGATAATGTG
GAGTGAGGCCGGGTTAAACATTAGCCGGCAGATGGTCCATGGGGGGAAGGCCAGCCATGG
GACCTAGCACCTTCTAGGAGGGGGCTCTTAAGGGCCGACTCTCTGGGTCCCAACACCAGC
CAGGGTGTGGGGAGAGGCAGAGGCTGAGGGCTGCAGAGCGCCCCCTTCCGGCGTCTGGGA
TTGCAGTGATTCAGCTTCCATTGCCACCCAGCAGCCTGTGGCCTCACTTGGTCCCACCTT
GGAGTCACCTGACTCCGGCCCAGGGGGAATACAGGTGTATGGAAAAAAGGTACACAAGGG
GCTAGTTTTATATGCTTATGGGGAGTTCCCGTCGTGGCTCAGCGAGCTGTGACGAAGGCC
AGCAGCTACAGCTCTGTTTCTCTGATTTGACCCCTATCCTGGAAATCTCCATACGCTGCC
TGCCGGTGCGTCCTCGAAAAAGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-541, - strand, RNAz p=0.793988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-541, - strand, RNAz p=0.793988

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               528-653, + strand, RNAmicro p=0.981165

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               528-653, + strand, RNAmicro p=0.981165

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-618, gnl|bosTau2|chr25 (4269641-4269061)
               

               
               12-618, gnl|Hg17|chr16 (4304548-4303854)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-618, gnl|bosTau2|chr25 (4269641-4269061)
               

               
               12-618, gnl|Hg17|chr16 (4304548-4303854)

	12-618, gnl\|bosTau2\|chr25 (4269641-4269061)
	12-618, gnl\|Hg17\|chr16 (4304548-4303854)