Ss1.1-Pig4-TMW8053A10.5
|
GAAGAAAGAAGTTCCCCTTTGCTTCGGAATAAAACTCATTCTATTGGCTCAACTAACACG
GGGGAGGGGGGGCGCAGAAGGACCCTTGCTGGAGACGGACTCTAGAAGGGTGAATTTCAC
AAGGAGACAAGAAGAGGGTTGCATGTTGGTTGCTGAAGAAGATACAAAAGCCGAGGAATT
CTGACAGTGGCCTCTGGATCCAAGGCACCCACAAAGAAAAAGGACTTTGTGATAAAATCA
AGAGCTCAGGGCTTCAATCACTTTTTCTGATCACTGAAGACTGGGAGGTGTCAAGATGAG
ATTGTCAGATGGTCAGACTCTGCGGGACCCAGTCAAGAGATGAAGCTTCATCTACCCCCA
CCCCTCCGCCAAGGCATCAACAAAGCAGAAGGAAGTGGTGAGAGGTGGGGTTTCTTGGCG
TTCCACTTTCCCTTTCCCCTCCCTGTATGTCTGAGGGGCTGAACACAAAGCCAAGTTATT
GCCCCTACCCTGTAGCAAAAAAGGAGTGTGTCAACCCTCAGCTTTCCCCCTCGCTGATGT
CAGTGGGGACCAGTGGGGTGCTGAGCTTCCATCCACACTAGGAGGCAGTGAGACATCATG
AGTCAGTGCCCTGTTTTCACTGGGAAGGTGTCAGTGGAGCCAAGGGGGGAGCTGAACTTC
CACACCACACGTCCATAATAGAGCAGTGGGAGTCACTGCTTACTTTTGCTGGGGTAGTAT
CATCATGGACCAGAGGGAAGCAGAACAGATGCACCACTCAGCCCTCCTTCTACTCAACAA
CCAGAGGACTGCCTGTTTAAAAAAAAAAAAAAAAGGAATTAATAGGATCCAGAATCTACT
GTTATAATATCCAAAATGTTCAGGATATAATCAAAAAGTCACTCATCATACCCAGAACCA
GGAAAATCACAA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AGAGATAACAAAAGATAAAATTCTGGGAATTTGAGTATACATCAATGGAATCTCCCCATC
TGAACACAGGAGAAAAAAATTAACCATCTCAGGGACTGATGGGATTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGAAAGAAGTTCCCCTTTGCTTCGGAATAAAACTCATTCTATTGGCTCAACTAACACG
GGGGAGGGGGGGCGCAGAAGGACCCTTGCTGGAGACGGACTCTAGAAGGGTGAATTTCAC
AAGGAGACAAGAAGAGGGTTGCATGTTGGTTGCTGAAGAAGATACAAAAGCCGAGGAATT
CTGACAGTGGCCTCTGGATCCAAGGCACCCACAAAGAAAAAGGACTTTGTGATAAAATCA
AGAGCTCAGGGCTTCAATCACTTTTTCTGATCACTGAAGACTGGGAGGTGTCAAGATGAG
ATTGTCAGATGGTCAGACTCTGCGGGACCCAGTCAAGAGATGAAGCTTCATCTACCCCCA
CCCCTCCGCCAAGGCATCAACAAAGCAGAAGGAAGTGGTGAGAGGTGGGGTTTCTTGGCG
TTCCACTTTCCCTTTCCCCTCCCTGTATGTCTGAGGGGCTGAACACAAAGCCAAGTTATT
GCCCCTACCCTGTAGCAAAAAAGGAGTGTGTCAACCCTCAGCTTTCCCCCTCGCTGATGT
CAGTGGGGACCAGTGGGGTGCTGAGCTTCCATCCACACTAGGAGGCAGTGAGACATCATG
AGTCAGTGCCCTGTTTTCACTGGGAAGGTGTCAGTGGAGCCAAGGGGGGAGCTGAACTTC
CACACCACACGTCCATAATAGAGCAGTGGGAGTCACTGCTTACTTTTGCTGGGGTAGTAT
CATCATGGACCAGAGGGAAGCAGAACAGATGCACCACTCAGCCCTCCTTCTACTCAACAA
CCAGAGGACTGCCTGTTTAAAAAAAAAAAAAAAAGGAATTAATAGGATCCAGAATCTACT
GTTATAATATCCAAAATGTTCAGGATATAATCAAAAAGTCACTCATCATACCCAGAACCA
GGAAAATCACAA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AGAGATAACAAAAGATAAAATTCTGGGAATTTGAGTATACATCAATGGAATCTCCCCATC
TGAACACAGGAGAAAAAAATTAACCATCTCAGGGACTGATGGGATTTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
192-322, gnl|bosTau2|chrX (27695423-27695552) |
|
192-322, gnl|canFam2|chrX (39988344-39988508) |
|
192-322, gnl|dasNov1|scaffold_100447 (4322-4478) |
|
192-322, gnl|echTel1|scaffold_103782 (2060-1908) |
|
192-322, gnl|galGal2|chr1 (104196905-104196747) |
|
192-322, gnl|hg17|chrX (45936352-45936512) |
|
192-322, gnl|Hg17|chrX (45936422-45936555) |
|
192-322, gnl|mm7|chrX (18324613-18324779) |
|
192-322, gnl|Mm7|chrX (18324683-18324822) |
|
192-322, gnl|monDom2|scaffold_29 (16830083-16829909) |
|
192-322, gnl|rheMac2|chrX (44158659-44158818) |
| |
|
354-912, gnl|bosTau2|chrX (27715407-27715961) |
|
354-912, gnl|Hg17|chrX (45960349-45960900) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
192-322, gnl|bosTau2|chrX (27695423-27695552) |
|
192-322, gnl|canFam2|chrX (39988344-39988508) |
|
192-322, gnl|dasNov1|scaffold_100447 (4322-4478) |
|
192-322, gnl|echTel1|scaffold_103782 (2060-1908) |
|
192-322, gnl|galGal2|chr1 (104196905-104196747) |
|
192-322, gnl|hg17|chrX (45936352-45936512) |
|
192-322, gnl|Hg17|chrX (45936422-45936555) |
|
192-322, gnl|mm7|chrX (18324613-18324779) |
|
192-322, gnl|Mm7|chrX (18324683-18324822) |
|
192-322, gnl|monDom2|scaffold_29 (16830083-16829909) |
|
192-322, gnl|rheMac2|chrX (44158659-44158818) |
| |
|
354-912, gnl|bosTau2|chrX (27715407-27715961) |
|
354-912, gnl|Hg17|chrX (45960349-45960900) |
