Non-Coding RNA Search

Ss1.1-Pig4-TMW8053B15.5

Sequence:


               
               TTCTGCCGCTCCTGACTTTACTGCTTTTCAACCTGAGGTGGGAGACCGGTCTGAAGGCAT
TAGATGCCCTCTGTGCTAATCCATGGTTCCCTTCGGAAGATCAGAGCCCTCAGCCACCAC
TGAAGACAGGTCCACGTCCTCCACTGCTCAAGCCACCATAGCCAATAAGAATACTTTGTC
CATCCCACTTCTGGGCATCTGTCCAAAGAAATCCATGACTCGAATAGACACATGTACTCC
AATGTTCATTGCAGCACTATTTGCAATAGCCAAGATATGGAAAAAACCTAAATGTCCATC
GACAGGAGTGGATAAAGAAGATGCAGTACATATACACAATGGAACATTACTCAGCCATTA
AAAGGAAAGAAATAACGGCATTTGTAACAACCCGGATGGACCTAGAAATTATCATGCTAA
GTGAAGTCAGTCAATGAGACACCAGCATCAAATGCTATCACTGATATGTGGAATCTGAAA
AAAGGACACAATGAACTTCTTTGCAGAACAGATACTGAGACTTTGCAAAACTTATGGTTT
AAAAATGAGACAGGGTGGGGGGTAGGGAGATGCACTGAAGGTTTGTGATGACTGTTGTAC
ACCTATAAATGTAATAAAATTCATTAAGCATAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGCCGCTCCTGACTTTACTGCTTTTCAACCTGAGGTGGGAGACCGGTCTGAAGGCAT
TAGATGCCCTCTGTGCTAATCCATGGTTCCCTTCGGAAGATCAGAGCCCTCAGCCACCAC
TGAAGACAGGTCCACGTCCTCCACTGCTCAAGCCACCATAGCCAATAAGAATACTTTGTC
CATCCCACTTCTGGGCATCTGTCCAAAGAAATCCATGACTCGAATAGACACATGTACTCC
AATGTTCATTGCAGCACTATTTGCAATAGCCAAGATATGGAAAAAACCTAAATGTCCATC
GACAGGAGTGGATAAAGAAGATGCAGTACATATACACAATGGAACATTACTCAGCCATTA
AAAGGAAAGAAATAACGGCATTTGTAACAACCCGGATGGACCTAGAAATTATCATGCTAA
GTGAAGTCAGTCAATGAGACACCAGCATCAAATGCTATCACTGATATGTGGAATCTGAAA
AAAGGACACAATGAACTTCTTTGCAGAACAGATACTGAGACTTTGCAAAACTTATGGTTT
AAAAATGAGACAGGGTGGGGGGTAGGGAGATGCACTGAAGGTTTGTGATGACTGTTGTAC
ACCTATAAATGTAATAAAATTCATTAAGCATAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62646758|ref|XP_575347.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62646758|ref|XP_575347.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-337, + strand, RNAz p=0.982965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-337, + strand, RNAz p=0.982965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               177-634, gnl|bosTau2|chr26 (14951551-14951086)
               


               
               182-631, gnl|bosTau2|chr12 (7977600-7978043)
               


               
               183-627, gnl|bosTau2|chr10 (16598252-16598702)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-634, gnl|bosTau2|chr26 (14951551-14951086)
               


               
               182-631, gnl|bosTau2|chr12 (7977600-7978043)
               


               
               183-627, gnl|bosTau2|chr10 (16598252-16598702)

	177-634, gnl\|bosTau2\|chr26 (14951551-14951086)

	182-631, gnl\|bosTau2\|chr12 (7977600-7978043)

	183-627, gnl\|bosTau2\|chr10 (16598252-16598702)