Non-Coding RNA Search

Ss1.1-Pig4-TMW8053D14.5

Sequence:


               
               CGCTCGCTCGTCTCCCACATTGTCTCTGCCTCGTTTTCTCTCCTAGTTGAGGGGAAAAAA
GAAAATCACCATCATCCTGCGGGAGCCCCCTCGCCCTCAGAGAAACAAAACCAGACATGC
TCTTGGGCTCCCGCTCCTGAAGGATTGGCCGAGCGCGGAGCGAGCGGGCAGCCTGGTGGA
GCCCGCACGAAAGGTCACGGGAGGGAAGCCCCCGCAGCCCCCGGCTCTGTCCCCGCGGCC
GGCCGGTCCTCGGCCCCAGCCCCGCGGGCCCCCCGCCCCGTCCCCCGCTTTCTCGGGAGC
CGGCCGAACACACCTCCATTGATGGTCTAGCGCATCCGGGGGAGCATTTTTGGCACGTTG
GGGTGGTTGGAGTGGTTGGATTTTCCCTGGAATTGAGTGAGAAATTCAGAAGACTGAAGC
CCAGGCTTACTGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAAGAAGGCACGT
GGCGAATCATGACAGCTGACAAAGACAAAGACAAAGACAAAGAGAAGGACCGGGACCGAG
ATCGGGACCGAGAGAGGGAGAAGAGAGACAAAGCCAGGGAGAGCGAGAACTCCAGGCCCC
GCAGGAGCTGCACCTTGGAAGGAGGAGCCAAGAATTACGCTGAGAGTGATCATAGCGAAG
ATGAGGACAATGACAACAACAGTGCCACCACGGAGGAGTCCACGAAGAAGAACAAGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTCGCTCGTCTCCCACATTGTCTCTGCCTCGTTTTCTCTCCTAGTTGAGGGGAAAAAA
GAAAATCACCATCATCCTGCGGGAGCCCCCTCGCCCTCAGAGAAACAAAACCAGACATGC
TCTTGGGCTCCCGCTCCTGAAGGATTGGCCGAGCGCGGAGCGAGCGGGCAGCCTGGTGGA
GCCCGCACGAAAGGTCACGGGAGGGAAGCCCCCGCAGCCCCCGGCTCTGTCCCCGCGGCC
GGCCGGTCCTCGGCCCCAGCCCCGCGGGCCCCCCGCCCCGTCCCCCGCTTTCTCGGGAGC
CGGCCGAACACACCTCCATTGATGGTCTAGCGCATCCGGGGGAGCATTTTTGGCACGTTG
GGGTGGTTGGAGTGGTTGGATTTTCCCTGGAATTGAGTGAGAAATTCAGAAGACTGAAGC
CCAGGCTTACTGTCTACCTTTCACGGAGGCCCAGCCGTGAGAGGACAGAAGAAGGCACGT
GGCGAATCATGACAGCTGACAAAGACAAAGACAAAGACAAAGAGAAGGACCGGGACCGAG
ATCGGGACCGAGAGAGGGAGAAGAGAGACAAAGCCAGGGAGAGCGAGAACTCCAGGCCCC
GCAGGAGCTGCACCTTGGAAGGAGGAGCCAAGAATTACGCTGAGAGTGATCATAGCGAAG
ATGAGGACAATGACAACAACAGTGCCACCACGGAGGAGTCCACGAAGAAGAACAAGAAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q640I1_XENLA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q640I1_XENLA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-141, - strand, RNAz p=0.986554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-141, - strand, RNAz p=0.986554

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-344, gnl|bosTau2|chr16 (31463811-31463455)
               

               
               3-344, gnl|dasNov1|scaffold_19256 (17390-17892)
               

               
               3-344, gnl|echTel1|scaffold_288315 (42426-42906)
               

               
               3-344, gnl|hg17|chr1 (8811324-8811776)
               

               
               3-344, gnl|Hg17|chr1 (8811854-8811485)
               

               
               3-344, gnl|loxAfr1|scaffold_6718 (34802-35261)
               

               
               3-344, gnl|mm7|chr4 (149271777-149271339)
               

               
               3-344, gnl|Mm7|chr4 (149271254-149271617)
               

               
               3-344, gnl|monDom2|scaffold_148 (894572-893921)
               

               
               3-344, gnl|panTro1|chr1 (8817792-8818244)
               

               
               3-344, gnl|rheMac2|chr1 (11846447-11846899)
               

               
               3-344, gnl|rn3|chr5 (167450904-167450464)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-344, gnl|bosTau2|chr16 (31463811-31463455)
               

               
               3-344, gnl|dasNov1|scaffold_19256 (17390-17892)
               

               
               3-344, gnl|echTel1|scaffold_288315 (42426-42906)
               

               
               3-344, gnl|hg17|chr1 (8811324-8811776)
               

               
               3-344, gnl|Hg17|chr1 (8811854-8811485)
               

               
               3-344, gnl|loxAfr1|scaffold_6718 (34802-35261)
               

               
               3-344, gnl|mm7|chr4 (149271777-149271339)
               

               
               3-344, gnl|Mm7|chr4 (149271254-149271617)
               

               
               3-344, gnl|monDom2|scaffold_148 (894572-893921)
               

               
               3-344, gnl|panTro1|chr1 (8817792-8818244)
               

               
               3-344, gnl|rheMac2|chr1 (11846447-11846899)
               

               
               3-344, gnl|rn3|chr5 (167450904-167450464)

	3-344, gnl\|bosTau2\|chr16 (31463811-31463455)
	3-344, gnl\|dasNov1\|scaffold_19256 (17390-17892)
	3-344, gnl\|echTel1\|scaffold_288315 (42426-42906)
	3-344, gnl\|hg17\|chr1 (8811324-8811776)
	3-344, gnl\|Hg17\|chr1 (8811854-8811485)
	3-344, gnl\|loxAfr1\|scaffold_6718 (34802-35261)
	3-344, gnl\|mm7\|chr4 (149271777-149271339)
	3-344, gnl\|Mm7\|chr4 (149271254-149271617)
	3-344, gnl\|monDom2\|scaffold_148 (894572-893921)
	3-344, gnl\|panTro1\|chr1 (8817792-8818244)
	3-344, gnl\|rheMac2\|chr1 (11846447-11846899)
	3-344, gnl\|rn3\|chr5 (167450904-167450464)