Non-Coding RNA Search

Ss1.1-Pig4-TMW8053D15.3

Sequence:


               
               AAGGTATAAGATCTTTCAAGTGTCAGCCCTTACTTAATTTTTACCAAGTCATGGCTTACT
ATTCTGGGTAAGTAGAAATAGTTGGCAAGTTTATTTATTTATTTAGCCAGTTAACTTTGA
TGGCTTTTTGGTAAGCATCAGTATTATACTGATTGTGCACTGAGAAGATTGAAAGTATCC
ACTGCAAAAGTGTGATAGTTGTGTTCTCACCTTTGAGATCCCTTATAATGAAACAGTCAT
TGTGATTTACCTGTTTCGCTTGTTTTAAGACTTGGGACTTCATAGGCACTGAACATGGTC
AAATCTTTCAGTATTAGCAATAGTGGTTTTTTTTGCCATTGTTATTTCCAGTCTTTTCAC
AAGGTGTCATTTCCTCCTGAGTTACACCCTTTTATCCATCACTCATAGATATTTTGTTCA
TAAAAGTCATTTCCTTTACATTTATTTGAAAATCTGTAATTCCTATTTGATCATTTTTAA
ATAATTGTTAATGTATCATTACCAGCTGTCATTTCTATAAACTCATGGTAATAATGTATG
TTTCACTCTTGCAAAAATGAGTTTGTGAACCTGGGATTTAGGATAAAACGTTTTTTTCTG
TTAACTAGATACCTTCAGTGATTCTCCAATTTGGCCCTGGATCCCATCATTGTCTGATAT
AGCTGCTGTGTTTTTCAATATGGGGATTGATTTTAGATTTTTGTTTCCTCTGGAGAATCT
TCAGCCAGACTTTAATGAAGACAATCTAGTGTAAGTGTTCTTTCCAAAATTAACATTCTG
AAATGTCCAAAAATATCCTTTTAAACAATTTTTGTATATTTATATATATATGTATATATA
CATAAACAACGGTTAATTTCCATTTGATAATTTTCAGCATCCATTCTTGATTTTTTTTTC
ATCTCTCAAAGTTGAACTGGATCTTGAATTAGGTACATTCTTAACATCTGTCTTAATCTA
AATGCCATCATCATGTTTAACAGGGAGAAAAATGGAAACTTTTTAAAAATTATTTATTGG
TTTATTTTTGAAACATTTTTAAATTCAAAAAAAATTTTTTTTTGTCTTTTTAGGGCCGCA
TCCATATGCCGCGGAAGCGGCCCAAGAAATAGCAACAACAACAACAAGAACAAAAGACAA
AAAGACCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTATAAGATCTTTCAAGTGTCAGCCCTTACTTAATTTTTACCAAGTCATGGCTTACT
ATTCTGGGTAAGTAGAAATAGTTGGCAAGTTTATTTATTTATTTAGCCAGTTAACTTTGA
TGGCTTTTTGGTAAGCATCAGTATTATACTGATTGTGCACTGAGAAGATTGAAAGTATCC
ACTGCAAAAGTGTGATAGTTGTGTTCTCACCTTTGAGATCCCTTATAATGAAACAGTCAT
TGTGATTTACCTGTTTCGCTTGTTTTAAGACTTGGGACTTCATAGGCACTGAACATGGTC
AAATCTTTCAGTATTAGCAATAGTGGTTTTTTTTGCCATTGTTATTTCCAGTCTTTTCAC
AAGGTGTCATTTCCTCCTGAGTTACACCCTTTTATCCATCACTCATAGATATTTTGTTCA
TAAAAGTCATTTCCTTTACATTTATTTGAAAATCTGTAATTCCTATTTGATCATTTTTAA
ATAATTGTTAATGTATCATTACCAGCTGTCATTTCTATAAACTCATGGTAATAATGTATG
TTTCACTCTTGCAAAAATGAGTTTGTGAACCTGGGATTTAGGATAAAACGTTTTTTTCTG
TTAACTAGATACCTTCAGTGATTCTCCAATTTGGCCCTGGATCCCATCATTGTCTGATAT
AGCTGCTGTGTTTTTCAATATGGGGATTGATTTTAGATTTTTGTTTCCTCTGGAGAATCT
TCAGCCAGACTTTAATGAAGACAATCTAGTGTAAGTGTTCTTTCCAAAATTAACATTCTG
AAATGTCCAAAAATATCCTTTTAAACAATTTTTGTATATTTATATATATATGTATATATA
CATAAACAACGGTTAATTTCCATTTGATAATTTTCAGCATCCATTCTTGATTTTTTTTTC
ATCTCTCAAAGTTGAACTGGATCTTGAATTAGGTACATTCTTAACATCTGTCTTAATCTA
AATGCCATCATCATGTTTAACAGGGAGAAAAATGGAAACTTTTTAAAAATTATTTATTGG
TTTATTTTTGAAACATTTTTAAATTCAAAAAAAATTTTTTTTTGTCTTTTTAGGGCCGCA
TCCATATGCCGCGGAAGCGGCCCAAGAAATAGCAACAACAACAACAAGAACAAAAGACAA
AAAGACCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               44-201, + strand, RNAz p=0.867869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-201, + strand, RNAz p=0.867869

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               5-831, gnl|bosTau2|chr26 (13352144-13352961)
               

               
               5-831, gnl|Hg17|chr10 (102687737-102688554)
               


               
               836-1029, gnl|bosTau2|chr26 (13352926-13353111)
               

               
               836-1029, gnl|Hg17|chr10 (102688530-102688704)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-831, gnl|bosTau2|chr26 (13352144-13352961)
               

               
               5-831, gnl|Hg17|chr10 (102687737-102688554)
               


               
               836-1029, gnl|bosTau2|chr26 (13352926-13353111)
               

               
               836-1029, gnl|Hg17|chr10 (102688530-102688704)

	5-831, gnl\|bosTau2\|chr26 (13352144-13352961)
	5-831, gnl\|Hg17\|chr10 (102687737-102688554)

	836-1029, gnl\|bosTau2\|chr26 (13352926-13353111)
	836-1029, gnl\|Hg17\|chr10 (102688530-102688704)