Non-Coding RNA Search

Ss1.1-Pig4-TMW8053F08.3

Sequence:


               
               ACGGCAATGCCGGATCGTTAACCCACTGAGCAAGGGCAGGGACCAAACCCGCAACCTCAT
GGTTCCTAGTCGGGTTCGTTAACCACTGCACCACGATGCGAACTCCTGATTAAACATTTT
TGTCCCTTTTATTCTCCTAGAATTTTTCTGGGTTTCTGTTTTCCTTTGTATTGCATATTT
TTCTGACAAAATTTATTTCCCAAGGGATATCCAACAAGAGGAGATTTTTTGCAATAATAT
ACATGACTGTTAGGGGATCACTTAAATCTGAAATTTGATTTTTTTTATTGTCTTATTACA
AAAGTAATGCATGCTTATTATAGAAGAATCAGAAAATACATCCAAGCAAACTATTATAAA
GAATGTTAATTCCACCTGTGAGCCAACCATTATTTTAATCTCTGAAAAATACTCTTTGAG
GTCCTTTTCAATGAATACTTAATTCTTTTTCTAAATGGAATCTGGCCATAGTATTGTTTT
GTAGCCAGTGATTTATTTAAATACTAATTGCTGGATATTCTTCCACATGAGTCCCATGTT
GTTGGATGTTTTCTTGGGAATAACTGCATTAGAAGTTTATAAGCAAATATGTAAAGTTGG
AAGGAAACAAAAGTTTATATAAATTTCAACCAAATGATCATACTGAATAATTTTAACTTT
AAAATTTTTATTATTTATTTTTTTTGGCCCTGGTGTGTAGCAGCTTGATGTGGTAGTGGT
ATCTGTGTCCCAACTAGGGATTGAATCTGGGCCGCAACAGTGGAAGTGCTGACTCCTAAC
CACCAGACCACCAAGGAACTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCAATGCCGGATCGTTAACCCACTGAGCAAGGGCAGGGACCAAACCCGCAACCTCAT
GGTTCCTAGTCGGGTTCGTTAACCACTGCACCACGATGCGAACTCCTGATTAAACATTTT
TGTCCCTTTTATTCTCCTAGAATTTTTCTGGGTTTCTGTTTTCCTTTGTATTGCATATTT
TTCTGACAAAATTTATTTCCCAAGGGATATCCAACAAGAGGAGATTTTTTGCAATAATAT
ACATGACTGTTAGGGGATCACTTAAATCTGAAATTTGATTTTTTTTATTGTCTTATTACA
AAAGTAATGCATGCTTATTATAGAAGAATCAGAAAATACATCCAAGCAAACTATTATAAA
GAATGTTAATTCCACCTGTGAGCCAACCATTATTTTAATCTCTGAAAAATACTCTTTGAG
GTCCTTTTCAATGAATACTTAATTCTTTTTCTAAATGGAATCTGGCCATAGTATTGTTTT
GTAGCCAGTGATTTATTTAAATACTAATTGCTGGATATTCTTCCACATGAGTCCCATGTT
GTTGGATGTTTTCTTGGGAATAACTGCATTAGAAGTTTATAAGCAAATATGTAAAGTTGG
AAGGAAACAAAAGTTTATATAAATTTCAACCAAATGATCATACTGAATAATTTTAACTTT
AAAATTTTTATTATTTATTTTTTTTGGCCCTGGTGTGTAGCAGCTTGATGTGGTAGTGGT
ATCTGTGTCCCAACTAGGGATTGAATCTGGGCCGCAACAGTGGAAGTGCTGACTCCTAAC
CACCAGACCACCAAGGAACTCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               432-551, - strand, RNAz p=0.952252

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-551, - strand, RNAz p=0.952252

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-614, gnl|bosTau2|chr6 (32409292-32408783)
               

               
               107-614, gnl|Hg17|chr4 (17518910-17519424)
               

               
               107-614, gnl|Mm7|chr5 (45019156-45019670)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-614, gnl|bosTau2|chr6 (32409292-32408783)
               

               
               107-614, gnl|Hg17|chr4 (17518910-17519424)
               

               
               107-614, gnl|Mm7|chr5 (45019156-45019670)

	107-614, gnl\|bosTau2\|chr6 (32409292-32408783)
	107-614, gnl\|Hg17\|chr4 (17518910-17519424)
	107-614, gnl\|Mm7\|chr5 (45019156-45019670)