Ss1.1-Pig4-TMW8053H12.3
|
CTTGCTTGGTAACAGACCCAGCTGTCAGCCAGCTCCTGCTTTCAGCCTCCGAGTTCCCCG
TTCCCGGATTTGATGAGCTGGATGGTGTGACACCATCGTGCCCCCGACCCCAGAGCAGCC
CTCCAGAACAGAAAGAGGCTGAGCCAGAGAAGAGGCCAAAGAAAGTCTCACAGATTCGCA
TCCGGAAAACTATACCCAAGCCAGACCCTAACCTTACCCCCATGGGCCTTCCTCGACCCA
AAAGGTTAAAGAAAAAGGAGTTTAGTTTAGAAGAAATATATACCAACAAGAATTATAAAT
CTCCTCCTGCAAACAGGTGTTTAGAGACCATCTTTGAGGAACCTAAGGAACGGAATGGAA
CGCTTATCTCAATCAGCCAACAGAAGAGGAAGCGAGTTCTGGAATTCCAGGATTTCACAG
TCCCACGGAAGAGGCGGGCTCGTGGTAAGGTCAAGGTGGCAGGCAGCTTTACCCGGGCCC
AGAAGGCGGCGCTGCAGAGTCGAGAGCTGGATGCTCTTCTGCTGCAGAAACTAATGGAAC
TGGAGACCTTCTTTGCCAAGGAAGAGGAGCAGGAGCAATCGTCTGGTTGTTGAGAAGCTA
TTCAGATTGGGGGTTTGATTTTAGACTTTCCAGGCCTCCTTGGAAGAGGTTGCCTAACTT
TGCCCTACCGCCCAAACCACTCAAAATGCAGTCTATGGGTTTTTACCTATTTCAAGGTGC
AGCCTTTTTAGGAACTGGTGAAGGAAGGTCCTCTAACTTGTACTGCTGAGAATAGAACCT
CAGGAATGCTCCCTTTCTCCTGGAAATGGTCCTGAATGATGTCGGCCTCTTCCCCCCACT
CTGCCATCCACGGAGGAGGACACAACGTCCCTTCAGTAACACTAGGATTCCAAGGACTCA
CAACATTTGCACGTCCATGTGAAAGTTCCACGTTTACAGTGGTGCTAGACCAAGATTATT
TAGAGAATATTTAGAGACGTCGTGGCCTAGGGAGTGGACCTGGCAAGCTGTCCTGCGTGG
TCTCACCAGCTCATTTCAGTGGTTGAGGAAAGATGAGCTGTTGTGTTTTCTAATCCTTTG
AGTCTGTCCAGAAACAGGTGTGTGTGTGTGCGTGTGTGTGTGTGGCTTCTTCCCATCATT
TCCTCCCCTCTGTGACTGGGTCACTAGTGCCAGAGGAGCCCGTCCAGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTGCTTGGTAACAGACCCAGCTGTCAGCCAGCTCCTGCTTTCAGCCTCCGAGTTCCCCG
TTCCCGGATTTGATGAGCTGGATGGTGTGACACCATCGTGCCCCCGACCCCAGAGCAGCC
CTCCAGAACAGAAAGAGGCTGAGCCAGAGAAGAGGCCAAAGAAAGTCTCACAGATTCGCA
TCCGGAAAACTATACCCAAGCCAGACCCTAACCTTACCCCCATGGGCCTTCCTCGACCCA
AAAGGTTAAAGAAAAAGGAGTTTAGTTTAGAAGAAATATATACCAACAAGAATTATAAAT
CTCCTCCTGCAAACAGGTGTTTAGAGACCATCTTTGAGGAACCTAAGGAACGGAATGGAA
CGCTTATCTCAATCAGCCAACAGAAGAGGAAGCGAGTTCTGGAATTCCAGGATTTCACAG
TCCCACGGAAGAGGCGGGCTCGTGGTAAGGTCAAGGTGGCAGGCAGCTTTACCCGGGCCC
AGAAGGCGGCGCTGCAGAGTCGAGAGCTGGATGCTCTTCTGCTGCAGAAACTAATGGAAC
TGGAGACCTTCTTTGCCAAGGAAGAGGAGCAGGAGCAATCGTCTGGTTGTTGAGAAGCTA
TTCAGATTGGGGGTTTGATTTTAGACTTTCCAGGCCTCCTTGGAAGAGGTTGCCTAACTT
TGCCCTACCGCCCAAACCACTCAAAATGCAGTCTATGGGTTTTTACCTATTTCAAGGTGC
AGCCTTTTTAGGAACTGGTGAAGGAAGGTCCTCTAACTTGTACTGCTGAGAATAGAACCT
CAGGAATGCTCCCTTTCTCCTGGAAATGGTCCTGAATGATGTCGGCCTCTTCCCCCCACT
CTGCCATCCACGGAGGAGGACACAACGTCCCTTCAGTAACACTAGGATTCCAAGGACTCA
CAACATTTGCACGTCCATGTGAAAGTTCCACGTTTACAGTGGTGCTAGACCAAGATTATT
TAGAGAATATTTAGAGACGTCGTGGCCTAGGGAGTGGACCTGGCAAGCTGTCCTGCGTGG
TCTCACCAGCTCATTTCAGTGGTTGAGGAAAGATGAGCTGTTGTGTTTTCTAATCCTTTG
AGTCTGTCCAGAAACAGGTGTGTGTGTGTGCGTGTGTGTGTGTGGCTTCTTCCCATCATT
TCCTCCCCTCTGTGACTGGGTCACTAGTGCCAGAGGAGCCCGTCCAGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
132-246, gnl|bosTau2|chr17 (43250887-43250773) |
|
132-246, gnl|canFam2|chr26 (27611081-27611327) |
|
132-246, gnl|dasNov1|scaffold_268451 (455-212) |
|
132-246, gnl|hg17|chr22 (30422101-30422360) |
|
132-246, gnl|Hg17|chr22 (30422308-30422194) |
|
132-246, gnl|loxAfr1|scaffold_30453 (8312-8546) |
|
132-246, gnl|mm7|chr5 (31882516-31882764) |
|
132-246, gnl|Mm7|chr5 (31882724-31882610) |
|
132-246, gnl|monDom2|scaffold_141 (567937-568166) |
|
132-246, gnl|panTro1|chr23 (30525559-30525818) |
|
132-246, gnl|rheMac2|chr10 (75598682-75598947) |
|
132-246, gnl|rn3|chr14 (83665655-83665420) |
| |
|
315-1188, gnl|bosTau2|chr17 (43240969-43240093) |
|
315-1188, gnl|Hg17|chr22 (30406345-30405433) |
|
315-1188, gnl|Mm7|chr5 (31856580-31855720) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
132-246, gnl|bosTau2|chr17 (43250887-43250773) |
|
132-246, gnl|canFam2|chr26 (27611081-27611327) |
|
132-246, gnl|dasNov1|scaffold_268451 (455-212) |
|
132-246, gnl|hg17|chr22 (30422101-30422360) |
|
132-246, gnl|Hg17|chr22 (30422308-30422194) |
|
132-246, gnl|loxAfr1|scaffold_30453 (8312-8546) |
|
132-246, gnl|mm7|chr5 (31882516-31882764) |
|
132-246, gnl|Mm7|chr5 (31882724-31882610) |
|
132-246, gnl|monDom2|scaffold_141 (567937-568166) |
|
132-246, gnl|panTro1|chr23 (30525559-30525818) |
|
132-246, gnl|rheMac2|chr10 (75598682-75598947) |
|
132-246, gnl|rn3|chr14 (83665655-83665420) |
| |
|
315-1188, gnl|bosTau2|chr17 (43240969-43240093) |
|
315-1188, gnl|Hg17|chr22 (30406345-30405433) |
|
315-1188, gnl|Mm7|chr5 (31856580-31855720) |
