Non-Coding RNA Search

Ss1.1-Pig4-TMW8053I15.3

Sequence:


               
               AGATGCTGACAGCAGCGAAGAACAGGAAGATGCCCTGAACATCTCCTCAATGTCTTTGCT
TGCTCCATTAGCACAGACAGTTGGTGTGAGTTTAGTTTCTTCGCCAAGATTGGAATTGAA
AGACACCAGCGTAAGTGATGAAAGTCCAAAGCCAGGAAAATTCCAGAGAACCCGGGTCCC
TCGAGCTGAGTCTGGTGATAGCATTGGTTCTGAAGATCGTGATCTTCCTTACAGCATTGA
TGCATATCGATCTCAAAGAGTCAAAGAAATAGACCGTCCTTCAATAAAGCAGGTGATTGT
TCGGAAGGAAGATGTTACTTCAAAACTGGATGAAAAAAAGAATGGCTTTCCTTGTCAAAT
TAACATCAAACAGAAAATGCAAGAACTCAATAATGAAATAAATTTGCAACAGACAGTGAT
CTATCAAGCTAGCCAGGCTCTTAACTGTTGTGTTGATGAAGAGCATGGAAAAGGTTCTTT
AGAAGAAGCTGAAGCAGAAAGACTTCTTCTAATTGCAACTGAGAAGAGAACACTTTTGAT
TGATGAGTTGAATAAATTGAAGAATGAAGGGCCTCAGAGGAAGAATAAGGCTAGTCCCAC
ATCCCAAAGTGAATTTGTCCCTTCTAAAGGATCAATTACTTTGTCAGAAATCCGCTTGCC
TCTAAAAGCAGATTTTGTCTGCAGTACAGTTCAGAAACCAGATGCTGCAAATTATTATTT
CTTAATTATACTAAAAGCAGGAGCTGAAAACATGGTAGCCACACCATTAGCAAGTACTTC
AAATTCTCTTAATGGGGATGCTCTAACATTCAGTACTACATTTACTCTACAAGATGTGTC
CAATGACTTTGAAATAAATATTGAAGTTTATAGCCTGGTACAAAAGAAAGATCCCTCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCTGACAGCAGCGAAGAACAGGAAGATGCCCTGAACATCTCCTCAATGTCTTTGCT
TGCTCCATTAGCACAGACAGTTGGTGTGAGTTTAGTTTCTTCGCCAAGATTGGAATTGAA
AGACACCAGCGTAAGTGATGAAAGTCCAAAGCCAGGAAAATTCCAGAGAACCCGGGTCCC
TCGAGCTGAGTCTGGTGATAGCATTGGTTCTGAAGATCGTGATCTTCCTTACAGCATTGA
TGCATATCGATCTCAAAGAGTCAAAGAAATAGACCGTCCTTCAATAAAGCAGGTGATTGT
TCGGAAGGAAGATGTTACTTCAAAACTGGATGAAAAAAAGAATGGCTTTCCTTGTCAAAT
TAACATCAAACAGAAAATGCAAGAACTCAATAATGAAATAAATTTGCAACAGACAGTGAT
CTATCAAGCTAGCCAGGCTCTTAACTGTTGTGTTGATGAAGAGCATGGAAAAGGTTCTTT
AGAAGAAGCTGAAGCAGAAAGACTTCTTCTAATTGCAACTGAGAAGAGAACACTTTTGAT
TGATGAGTTGAATAAATTGAAGAATGAAGGGCCTCAGAGGAAGAATAAGGCTAGTCCCAC
ATCCCAAAGTGAATTTGTCCCTTCTAAAGGATCAATTACTTTGTCAGAAATCCGCTTGCC
TCTAAAAGCAGATTTTGTCTGCAGTACAGTTCAGAAACCAGATGCTGCAAATTATTATTT
CTTAATTATACTAAAAGCAGGAGCTGAAAACATGGTAGCCACACCATTAGCAAGTACTTC
AAATTCTCTTAATGGGGATGCTCTAACATTCAGTACTACATTTACTCTACAAGATGTGTC
CAATGACTTTGAAATAAATATTGAAGTTTATAGCCTGGTACAAAAGAAAGATCCCTCAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10435032|dbj|BAB14463.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435032|dbj|BAB14463.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               401-518, + strand, RNAz p=0.869257
               

               
               558-720, - strand, RNAz p=0.840983

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               401-518, + strand, RNAz p=0.869257
               

               
               558-720, - strand, RNAz p=0.840983

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               225-381, gnl|bosTau2|chr4 (29078599-29078754)
               

               
               225-381, gnl|Hg17|chr7 (36233437-36233592)
               

               
               225-381, gnl|Mm7|chr9 (22239379-22239224)
               


               
               383-518, gnl|bosTau2|chr4 (29079646-29079781)
               

               
               383-518, gnl|Hg17|chr7 (36234706-36234841)
               

               
               383-518, gnl|Mm7|chr9 (22237561-22237426)
               


               
               519-720, gnl|bosTau2|chr4 (29080387-29080587)
               

               
               519-720, gnl|Hg17|chr7 (36235482-36235672)
               

               
               519-720, gnl|Mm7|chr9 (22237115-22236927)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-381, gnl|bosTau2|chr4 (29078599-29078754)
               

               
               225-381, gnl|Hg17|chr7 (36233437-36233592)
               

               
               225-381, gnl|Mm7|chr9 (22239379-22239224)
               


               
               383-518, gnl|bosTau2|chr4 (29079646-29079781)
               

               
               383-518, gnl|Hg17|chr7 (36234706-36234841)
               

               
               383-518, gnl|Mm7|chr9 (22237561-22237426)
               


               
               519-720, gnl|bosTau2|chr4 (29080387-29080587)
               

               
               519-720, gnl|Hg17|chr7 (36235482-36235672)
               

               
               519-720, gnl|Mm7|chr9 (22237115-22236927)

	401-518, + strand, RNAz p=0.869257
	558-720, - strand, RNAz p=0.840983

	225-381, gnl\|bosTau2\|chr4 (29078599-29078754)
	225-381, gnl\|Hg17\|chr7 (36233437-36233592)
	225-381, gnl\|Mm7\|chr9 (22239379-22239224)

	383-518, gnl\|bosTau2\|chr4 (29079646-29079781)
	383-518, gnl\|Hg17\|chr7 (36234706-36234841)
	383-518, gnl\|Mm7\|chr9 (22237561-22237426)

	519-720, gnl\|bosTau2\|chr4 (29080387-29080587)
	519-720, gnl\|Hg17\|chr7 (36235482-36235672)
	519-720, gnl\|Mm7\|chr9 (22237115-22236927)