Non-Coding RNA Search

Ss1.1-Pig4-TMW8053J03.3

Sequence:


               
               GGCTAAAGAACTCTTCAGGAGCGGCCAACTCGACGTGCGGGAGCTCATCTCCCTCTATCC
CTTCCTGCTGCCCACATCCTCCTCGTTCACCCGGTCCCACCCTCCTCTCCACGAGTATGC
AGACCTCAACCAGCTGACCCAGGGCGACCAGGAGAAGGTGACCAGGTGCAAGCGCTTCCT
CATGTCCTACCTGAATGAGGTCCGCAGCACGGAGATGGCCAACGGCTACAAGGAGGACGT
CGACACGGCCCTGCTCAAGCTGTACGCGGAGGCCGACCACGACAGCCTGCTGGACCTCCT
GGTCACCGAGAACTTCTGTCTGCTCACCGACAGTGCTGCCTGGCTGGAGAAGCACAAAAA
GTACTTTGCCCTGGGTTTGCTGTATCATTACAACAAGCAGGATGCTGCTGCAGTTCAGCT
GTGGGTGAACATTGTCAACGGGGATGTCCAGGACGCCACACGCTCAGACCTGTACGAGTA
CGTGGTGGATTTCCTCACCTACAGCCTCGACCCCGACCTCGTGTGGACCTACGCCGACTG
GGTCCTGCAGAAGAGCCAGGAGGTCGGAGTTCAGGTTTTCACCAAGAGACCACTGGATGA
CCAGCAGGGTAGTTTTAACCCAGACGATATTATCACTTGCCTTAAGAAGTACCCTCGGGC
TCTGGTGAAGTACCTGGAACATCTGGTCATGGACAGGAGACTGCAGGTGAGGCCTGGGGC
ACAGGCCAAGATGTGTGGGCTGCAGTGGCCTCACACTGTTCCAACTTGGCTAACGGGTCG
GATGTAACTTCCCGTTCCCAGCGCTTAGACTCTACTCATGGGAGGTCAGAGGGAGCTGGG
CGGTTTGTGAAAAAGACCAGAGGCCTGGAATTCCCCATGGCCTAGCAGTTAAAGATCCTG
CATTGTTACTGCAGCAGCTCCAGTCTCTGCTGTGGTGTGAGTTCGATCTCTGGCTGAGGA
ACTTCAACCTTGGGTGGGTGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTAAAGAACTCTTCAGGAGCGGCCAACTCGACGTGCGGGAGCTCATCTCCCTCTATCC
CTTCCTGCTGCCCACATCCTCCTCGTTCACCCGGTCCCACCCTCCTCTCCACGAGTATGC
AGACCTCAACCAGCTGACCCAGGGCGACCAGGAGAAGGTGACCAGGTGCAAGCGCTTCCT
CATGTCCTACCTGAATGAGGTCCGCAGCACGGAGATGGCCAACGGCTACAAGGAGGACGT
CGACACGGCCCTGCTCAAGCTGTACGCGGAGGCCGACCACGACAGCCTGCTGGACCTCCT
GGTCACCGAGAACTTCTGTCTGCTCACCGACAGTGCTGCCTGGCTGGAGAAGCACAAAAA
GTACTTTGCCCTGGGTTTGCTGTATCATTACAACAAGCAGGATGCTGCTGCAGTTCAGCT
GTGGGTGAACATTGTCAACGGGGATGTCCAGGACGCCACACGCTCAGACCTGTACGAGTA
CGTGGTGGATTTCCTCACCTACAGCCTCGACCCCGACCTCGTGTGGACCTACGCCGACTG
GGTCCTGCAGAAGAGCCAGGAGGTCGGAGTTCAGGTTTTCACCAAGAGACCACTGGATGA
CCAGCAGGGTAGTTTTAACCCAGACGATATTATCACTTGCCTTAAGAAGTACCCTCGGGC
TCTGGTGAAGTACCTGGAACATCTGGTCATGGACAGGAGACTGCAGGTGAGGCCTGGGGC
ACAGGCCAAGATGTGTGGGCTGCAGTGGCCTCACACTGTTCCAACTTGGCTAACGGGTCG
GATGTAACTTCCCGTTCCCAGCGCTTAGACTCTACTCATGGGAGGTCAGAGGGAGCTGGG
CGGTTTGTGAAAAAGACCAGAGGCCTGGAATTCCCCATGGCCTAGCAGTTAAAGATCCTG
CATTGTTACTGCAGCAGCTCCAGTCTCTGCTGTGGTGTGAGTTCGATCTCTGGCTGAGGA
ACTTCAACCTTGGGTGGGTGCAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61876428|ref|XP_587187.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61876428|ref|XP_587187.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               56-175, - strand, RNAz p=0.839736

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               56-175, - strand, RNAz p=0.839736

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               16-362, gnl|bosTau2|chr11 (6776699-6776353)
               

               
               16-362, gnl|Hg17|chr2 (105355701-105355355)
               

               
               16-362, gnl|Mm7|chr1 (43300611-43300265)
               


               
               561-865, gnl|bosTau2|chr11 (6771451-6771143)
               

               
               561-865, gnl|Hg17|chr2 (105348667-105348350)
               

               
               561-865, gnl|Mm7|chr1 (43295054-43294756)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-362, gnl|bosTau2|chr11 (6776699-6776353)
               

               
               16-362, gnl|Hg17|chr2 (105355701-105355355)
               

               
               16-362, gnl|Mm7|chr1 (43300611-43300265)
               


               
               561-865, gnl|bosTau2|chr11 (6771451-6771143)
               

               
               561-865, gnl|Hg17|chr2 (105348667-105348350)
               

               
               561-865, gnl|Mm7|chr1 (43295054-43294756)

	16-362, gnl\|bosTau2\|chr11 (6776699-6776353)
	16-362, gnl\|Hg17\|chr2 (105355701-105355355)
	16-362, gnl\|Mm7\|chr1 (43300611-43300265)

	561-865, gnl\|bosTau2\|chr11 (6771451-6771143)
	561-865, gnl\|Hg17\|chr2 (105348667-105348350)
	561-865, gnl\|Mm7\|chr1 (43295054-43294756)