Non-Coding RNA Search

Ss1.1-Pig4-TMW8053K08.5

Sequence:


               
               AATTTTTGAAATGAGAAATTAATATTCCAGACCGTGTGAATCAAATTCAATGACTTCTCA
AAAGGTAGCATTTATACCATATGTGCAAGTCTTTGATCCTTAAGTCTGTTCTCTCCTTGC
TCCAGTTTGCCTCTGCTGTTGATTCTTCTCCTCGCCTTCCAAGTTGCAAAAGAGAAAAAG
ATGACATAGCTCTCACAAGATGACTTCAACTACTGGAAGATATCAGATATGTCAGTGGCC
AGGCAGCACCCAGATAACTCTGCCATTTAAAGTTGTCCAGCCAGGCACTATGGGGAAAAA
GGCAGGGAGGAGGAAGGGCAGGTTGCTGACTGGTGCCTGAACTCCCACATGCAGCTTTAA
GCATAATAGACCCATTAAAAAAAATCAAAAAGTTTTCTGTAGTTTGTGACTAAGTGTGAG
AAGTCAGCAAGAGTCTGATTCTTAATACATTAAAATGAGCAGTTTATGCCAAAAGACATC
TTTAGAGTTAGGCACTGGGACGGAAATGCTTTTGAAGTTCCACGGCTTTGAGTAAGTAAT
ATCATTTCATGATTTGGGCAACATCCCCAAGCAGAGGAGGGGCCCATCCTCAGGAATGCA
AAGCCCTGCAGAGAAGGAAAGGGTTGAGAAGGGTCCACCCTACCTCTCTTCCTTTGCACA
AAGGCCTGAGGCTTTTGTATACAACCTGCTTTTGTAGGCTGAGGACATTGTGCAATACAG
CATAATGAGATGGAAACCTGCATTACAAAAGTAAATAGGAATGATTTGGGGTGGGGGTGG
GGAGAATGAAGAGAGTAAAACTGTAGCAACCAGTGAAATGTTAGTGGACCTTTTTCTAGC
CAGTTGGGAGTCTTTTTCCCAAAATAGGTAGATGTGTTAATAGATACTGAGTGAAGTTTA
GAGCACCTAGAATGTAGTCATTCAACTTATGAAAGGCAGAAGAATGCTATGCACCATTCC
ACTCGTATATGTTCCCACTCAACCCTGTGCATAATCTATCTCTCAGTACATCTCATACTA
CATTATTTGTATGTATCTCTTCTCCATCAGACCAGCCTTGTGAAAATGGTTTCATCATAG
TACCATCACTCACTTAACACAAGTAAATTTGAGTAAATTGAATAAATGGAGTGAATGAAG
AGGCCAAAATCCTTGAGTCAAGACATAGCAGGTTTTCTGATTCCTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTTGAAATGAGAAATTAATATTCCAGACCGTGTGAATCAAATTCAATGACTTCTCA
AAAGGTAGCATTTATACCATATGTGCAAGTCTTTGATCCTTAAGTCTGTTCTCTCCTTGC
TCCAGTTTGCCTCTGCTGTTGATTCTTCTCCTCGCCTTCCAAGTTGCAAAAGAGAAAAAG
ATGACATAGCTCTCACAAGATGACTTCAACTACTGGAAGATATCAGATATGTCAGTGGCC
AGGCAGCACCCAGATAACTCTGCCATTTAAAGTTGTCCAGCCAGGCACTATGGGGAAAAA
GGCAGGGAGGAGGAAGGGCAGGTTGCTGACTGGTGCCTGAACTCCCACATGCAGCTTTAA
GCATAATAGACCCATTAAAAAAAATCAAAAAGTTTTCTGTAGTTTGTGACTAAGTGTGAG
AAGTCAGCAAGAGTCTGATTCTTAATACATTAAAATGAGCAGTTTATGCCAAAAGACATC
TTTAGAGTTAGGCACTGGGACGGAAATGCTTTTGAAGTTCCACGGCTTTGAGTAAGTAAT
ATCATTTCATGATTTGGGCAACATCCCCAAGCAGAGGAGGGGCCCATCCTCAGGAATGCA
AAGCCCTGCAGAGAAGGAAAGGGTTGAGAAGGGTCCACCCTACCTCTCTTCCTTTGCACA
AAGGCCTGAGGCTTTTGTATACAACCTGCTTTTGTAGGCTGAGGACATTGTGCAATACAG
CATAATGAGATGGAAACCTGCATTACAAAAGTAAATAGGAATGATTTGGGGTGGGGGTGG
GGAGAATGAAGAGAGTAAAACTGTAGCAACCAGTGAAATGTTAGTGGACCTTTTTCTAGC
CAGTTGGGAGTCTTTTTCCCAAAATAGGTAGATGTGTTAATAGATACTGAGTGAAGTTTA
GAGCACCTAGAATGTAGTCATTCAACTTATGAAAGGCAGAAGAATGCTATGCACCATTCC
ACTCGTATATGTTCCCACTCAACCCTGTGCATAATCTATCTCTCAGTACATCTCATACTA
CATTATTTGTATGTATCTCTTCTCCATCAGACCAGCCTTGTGAAAATGGTTTCATCATAG
TACCATCACTCACTTAACACAAGTAAATTTGAGTAAATTGAATAAATGGAGTGAATGAAG
AGGCCAAAATCCTTGAGTCAAGACATAGCAGGTTTTCTGATTCCTAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               511-749, + strand, RNAz p=0.952629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               511-749, + strand, RNAz p=0.952629

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               195-882, gnl|bosTau2|chr8 (53036921-53036246)
               

               
               195-882, gnl|Hg17|chr9 (113068014-113068635)
               

               
               195-882, gnl|Mm7|chr4 (61799753-61800334)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               195-882, gnl|bosTau2|chr8 (53036921-53036246)
               

               
               195-882, gnl|Hg17|chr9 (113068014-113068635)
               

               
               195-882, gnl|Mm7|chr4 (61799753-61800334)

	195-882, gnl\|bosTau2\|chr8 (53036921-53036246)
	195-882, gnl\|Hg17\|chr9 (113068014-113068635)
	195-882, gnl\|Mm7\|chr4 (61799753-61800334)