Non-Coding RNA Search

Ss1.1-Pig4-TMW8053M09.3

Sequence:


               
               GTGGTCAGGTGCTCAAGAAGTGGTAGCTGTCTGTTTTCCCTTGAAATCCTGTTAATGTAC
ATAGAGGAGATGAAAAAATATGGCGGAATTTCTCTACCCGCCTGTGTCTTTTCCTGAATT
TCCGTCAGGATTTTTATATTCTTCCGCTAGTGCATAGTACTCTGGGCAGACAACACAAGG
AAGCGTCCCCCAAAAGGTGACAAAAGCCTGGCCCACGCTATCGTATTGACCATGCTATTG
TCTAGACACCTGAACTGTGTAAATACAGCAGGGGAAATATCAAGTTATCTAAAGAAGGAA
AAGGAAGTGCCTATTTTCCTTTAAAACATTCAAGCAGCCTTGCTTGTCCTCAGTGGAGAA
ACTTGAGTTTCTTGTTTTGCTTTAATATTGAAAGTTAGCTTAAAATGTTACCAACCTTTT
TTTTTTTTTAATGGAGGTAACTTTGAAGATTATCTTGTTTCTCTTCAATGTCGTTCTGTT
TTAATCATTAAAAAAAAAAAAAGATACGTCGGTTATATCATCTCACTTAGTGTGTATTCA
TGAACTATTTCATGCACATTTGTAGGCAGGATTGGATCTATGGGTGTCTAAGTTTGTAGA
AGGGTAGAAGCAAAAGTTGGTTTTAGAACAGTACAAAATTGATGTAAAGTGAAGAATCGA
TTATTTCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCAGGTGCTCAAGAAGTGGTAGCTGTCTGTTTTCCCTTGAAATCCTGTTAATGTAC
ATAGAGGAGATGAAAAAATATGGCGGAATTTCTCTACCCGCCTGTGTCTTTTCCTGAATT
TCCGTCAGGATTTTTATATTCTTCCGCTAGTGCATAGTACTCTGGGCAGACAACACAAGG
AAGCGTCCCCCAAAAGGTGACAAAAGCCTGGCCCACGCTATCGTATTGACCATGCTATTG
TCTAGACACCTGAACTGTGTAAATACAGCAGGGGAAATATCAAGTTATCTAAAGAAGGAA
AAGGAAGTGCCTATTTTCCTTTAAAACATTCAAGCAGCCTTGCTTGTCCTCAGTGGAGAA
ACTTGAGTTTCTTGTTTTGCTTTAATATTGAAAGTTAGCTTAAAATGTTACCAACCTTTT
TTTTTTTTTAATGGAGGTAACTTTGAAGATTATCTTGTTTCTCTTCAATGTCGTTCTGTT
TTAATCATTAAAAAAAAAAAAAGATACGTCGGTTATATCATCTCACTTAGTGTGTATTCA
TGAACTATTTCATGCACATTTGTAGGCAGGATTGGATCTATGGGTGTCTAAGTTTGTAGA
AGGGTAGAAGCAAAAGTTGGTTTTAGAACAGTACAAAATTGATGTAAAGTGAAGAATCGA
TTATTTCTCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               269-428, + strand, RNAz p=0.995547

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-428, + strand, RNAz p=0.995547

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               151-672, gnl|bosTau2|chr1 (48397898-48397365)
               

               
               151-672, gnl|Hg17|chr3 (190991325-190991857)
               

               
               151-672, gnl|Mm7|chr16 (25464696-25465211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-672, gnl|bosTau2|chr1 (48397898-48397365)
               

               
               151-672, gnl|Hg17|chr3 (190991325-190991857)
               

               
               151-672, gnl|Mm7|chr16 (25464696-25465211)

	151-672, gnl\|bosTau2\|chr1 (48397898-48397365)
	151-672, gnl\|Hg17\|chr3 (190991325-190991857)
	151-672, gnl\|Mm7\|chr16 (25464696-25465211)