Ss1.1-Pig4-TMW8053O08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACAGCGGCGGCAGTGGAGCAGGTCGGCAGCACTCAGATGCAGGCGGCGCGGCACGTCG TGTGCGCCCTGTCCGGCGGGGTGGACAGCGCGGTGGCCGCGCTGCTGTTGAGGCGGAGAG GTTACCAGGTGACGGGGGTGTTTATGAAGAACTGGGACTTGCTGGATGAGCGGGGGGTGT GCGCCGCCGACAAAGACTGCGAGGACGCGTACAGAGTGTGCCAGATCCTAGACCTCCCCT TCCGGCAAGTGTCCTACGTGAAGGAGTACTGGCATGATGTGTTCAGCGATTTCTTAAATG AGTATGAAAAAGGAAGAACTCCTAATCCTGACATCATCTGCAACAAGCACATCAAGTTCA GTTGCTTTTTTAATTACGCCGTGGATAATCTTGGAGCAGACGCCGTGGCCACGGGGCACT ATGCGAGGACGTCGCAGGAGGATGAGGAGGTCTTCCGGCAGAAGCGCATCAGGAGGCCAG AGGGGCTCTTCAGGAACCGCTTTGAAGTTAGGAGCGCGGTAAAGCTTCTCCAAGCAGCTG ACAGCTTTAAAGACCAGACCTTCTTTCTCAGCCAGGTTTCCCAGGACGCCCTGCGGAGAA CCCTCTTCCCCCTGGGGGGGTTAACGAAAGCGTTTGTAAAGAAAATAGCTGCTGAGAATA GACTCCATCATGTGCTTCAGAAAAAGGAGAGCATGGGCATCTGTTTCGTTGGCAAAAGGA ACTTTGAGGATTTCATTCTTCAGTATTTACAGCCTCGACCCGGAAAAATTATTTCTATAG AAGACAATAAGGTTCTGGGAACGCACAAAGGCTGGTTCCTGTACACTCTGGGCCAGAGAG CCAAGATATGGGGCTTGCGGGAGCCCTGGTACGTGGTGGAGAAGGACAGCGCCAGTGGCG ACGTGCTCGTGGCCCCCCGGACAGACCACCCGGCCCTGTACAGGGACCTGCTGCGGACGG GCCGCGTGCACTGGATCGCGGAGGAGCCGCCGGCAGCCCTGGTCCGGGACAAGATGATGG CCTGCCACTTCCGCTTCCGCCACCAGATGGCGCTAGTGCCCTGCGTGCTGACTCTTAACC AGGACGGCACCGTGTGGGTGACAGCTGTGGAGGCTGTGCGTGCTCTCGCCCTGGGACAGT TCGCTGTGTTCTACAAGGGGACGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACAGCGGCGGCAGTGGAGCAGGTCGGCAGCACTCAGATGCAGGCGGCGCGGCACGTCG TGTGCGCCCTGTCCGGCGGGGTGGACAGCGCGGTGGCCGCGCTGCTGTTGAGGCGGAGAG GTTACCAGGTGACGGGGGTGTTTATGAAGAACTGGGACTTGCTGGATGAGCGGGGGGTGT GCGCCGCCGACAAAGACTGCGAGGACGCGTACAGAGTGTGCCAGATCCTAGACCTCCCCT TCCGGCAAGTGTCCTACGTGAAGGAGTACTGGCATGATGTGTTCAGCGATTTCTTAAATG AGTATGAAAAAGGAAGAACTCCTAATCCTGACATCATCTGCAACAAGCACATCAAGTTCA GTTGCTTTTTTAATTACGCCGTGGATAATCTTGGAGCAGACGCCGTGGCCACGGGGCACT ATGCGAGGACGTCGCAGGAGGATGAGGAGGTCTTCCGGCAGAAGCGCATCAGGAGGCCAG AGGGGCTCTTCAGGAACCGCTTTGAAGTTAGGAGCGCGGTAAAGCTTCTCCAAGCAGCTG ACAGCTTTAAAGACCAGACCTTCTTTCTCAGCCAGGTTTCCCAGGACGCCCTGCGGAGAA CCCTCTTCCCCCTGGGGGGGTTAACGAAAGCGTTTGTAAAGAAAATAGCTGCTGAGAATA GACTCCATCATGTGCTTCAGAAAAAGGAGAGCATGGGCATCTGTTTCGTTGGCAAAAGGA ACTTTGAGGATTTCATTCTTCAGTATTTACAGCCTCGACCCGGAAAAATTATTTCTATAG AAGACAATAAGGTTCTGGGAACGCACAAAGGCTGGTTCCTGTACACTCTGGGCCAGAGAG CCAAGATATGGGGCTTGCGGGAGCCCTGGTACGTGGTGGAGAAGGACAGCGCCAGTGGCG ACGTGCTCGTGGCCCCCCGGACAGACCACCCGGCCCTGTACAGGGACCTGCTGCGGACGG GCCGCGTGCACTGGATCGCGGAGGAGCCGCCGGCAGCCCTGGTCCGGGACAAGATGATGG CCTGCCACTTCCGCTTCCGCCACCAGATGGCGCTAGTGCCCTGCGTGCTGACTCTTAACC AGGACGGCACCGTGTGGGTGACAGCTGTGGAGGCTGTGCGTGCTCTCGCCCTGGGACAGT TCGCTGTGTTCTACAAGGGGACGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 555-674, - strand, RNAz p=0.708491 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 555-674, - strand, RNAz p=0.708491 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 119-286, gnl|bosTau2|chr5 (73884012-73883845) | |
| 119-286, gnl|canFam2|chr10 (22912474-22912280) | |
| 119-286, gnl|danRer3|chrNA (109938328-109938142) | |
| 119-286, gnl|dasNov1|scaffold_135618 (734-928) | |
| 119-286, gnl|echTel1|scaffold_306786 (47196-47387) | |
| 119-286, gnl|fr1|chrUn (263422326-263422147) | |
| 119-286, gnl|galGal2|chrUn (116904143-116904336) | |
| 119-286, gnl|hg17|chr22 (45054183-45054377) | |
| 119-286, gnl|Hg17|chr22 (45054193-45054360) | |
| 119-286, gnl|loxAfr1|scaffold_225136 (312-505) | |
| 119-286, gnl|mm7|chr15 (85965028-85965221) | |
| 119-286, gnl|Mm7|chr15 (85965037-85965204) | |
| 119-286, gnl|oryCun1|scaffold_61779 (5-181) | |
| 119-286, gnl|panTro1|chr23 (45368793-45368987) | |
| 119-286, gnl|rheMac2|chr10 (90354319-90354513) | |
| 119-286, gnl|rn3|chr7 (123918964-123919157) | |
| 119-286, gnl|tetNig1|chrUn_random (55618824-55619000) | |
| 119-286, gnl|xenTro1|scaffold_24 (1068286-1068457) | |
| 516-689, gnl|bosTau2|chr5 (73878114-73877941) | |
| 516-689, gnl|canFam2|chr10 (22902863-22902664) | |
| 516-689, gnl|danRer3|chrNA (109936344-109936149) | |
| 516-689, gnl|dasNov1|scaffold_37963 (4501-4303) | |
| 516-689, gnl|fr1|chrUn (263421688-263421503) | |
| 516-689, gnl|galGal2|chrUn (116908049-116908246) | |
| 516-689, gnl|hg17|chr22 (45066691-45066890) | |
| 516-689, gnl|Hg17|chr22 (45066706-45066879) | |
| 516-689, gnl|mm7|chr15 (85974916-85975115) | |
| 516-689, gnl|Mm7|chr15 (85974931-85975104) | |
| 516-689, gnl|monDom2|scaffold_107 (1355313-1355499) | |
| 516-689, gnl|oryCun1|scaffold_150396 (444-640) | |
| 516-689, gnl|panTro1|chr23 (45381516-45381715) | |
| 516-689, gnl|rheMac2|chr10 (90367352-90367551) | |
| 516-689, gnl|rn3|chr7 (123927321-123927520) | |
| 516-689, gnl|tetNig1|chrUn_random (55619486-55619676) | |
| 516-689, gnl|xenTro1|scaffold_24 (1074411-1074602) | |
| 911-1056, gnl|bosTau2|chr5 (73874352-73874207) | |
| 911-1056, gnl|canFam2|chr10 (22898107-22897929) | |
| 911-1056, gnl|dasNov1|scaffold_37963 (186-10) | |
| 911-1056, gnl|fr1|chrUn (263420892-263420739) | |
| 911-1056, gnl|galGal2|chrUn (116912128-116912282) | |
| 911-1056, gnl|hg17|chr22 (45071835-45072013) | |
| 911-1056, gnl|Hg17|chr22 (45071859-45072004) | |
| 911-1056, gnl|mm7|chr15 (85978704-85978878) | |
| 911-1056, gnl|Mm7|chr15 (85978724-85978869) | |
| 911-1056, gnl|monDom2|scaffold_107 (1357046-1357223) | |
| 911-1056, gnl|oryCun1|scaffold_106843 (3516-3342) | |
| 911-1056, gnl|panTro1|chr23 (45386907-45387085) | |
| 911-1056, gnl|rheMac2|chr10 (90373531-90373709) | |
| 911-1056, gnl|rn3|chr7 (123931152-123931325) | |
| 911-1056, gnl|tetNig1|chrUn_random (55620269-55620418) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-286, gnl|bosTau2|chr5 (73884012-73883845) | |
| 119-286, gnl|canFam2|chr10 (22912474-22912280) | |
| 119-286, gnl|danRer3|chrNA (109938328-109938142) | |
| 119-286, gnl|dasNov1|scaffold_135618 (734-928) | |
| 119-286, gnl|echTel1|scaffold_306786 (47196-47387) | |
| 119-286, gnl|fr1|chrUn (263422326-263422147) | |
| 119-286, gnl|galGal2|chrUn (116904143-116904336) | |
| 119-286, gnl|hg17|chr22 (45054183-45054377) | |
| 119-286, gnl|Hg17|chr22 (45054193-45054360) | |
| 119-286, gnl|loxAfr1|scaffold_225136 (312-505) | |
| 119-286, gnl|mm7|chr15 (85965028-85965221) | |
| 119-286, gnl|Mm7|chr15 (85965037-85965204) | |
| 119-286, gnl|oryCun1|scaffold_61779 (5-181) | |
| 119-286, gnl|panTro1|chr23 (45368793-45368987) | |
| 119-286, gnl|rheMac2|chr10 (90354319-90354513) | |
| 119-286, gnl|rn3|chr7 (123918964-123919157) | |
| 119-286, gnl|tetNig1|chrUn_random (55618824-55619000) | |
| 119-286, gnl|xenTro1|scaffold_24 (1068286-1068457) | |
| 516-689, gnl|bosTau2|chr5 (73878114-73877941) | |
| 516-689, gnl|canFam2|chr10 (22902863-22902664) | |
| 516-689, gnl|danRer3|chrNA (109936344-109936149) | |
| 516-689, gnl|dasNov1|scaffold_37963 (4501-4303) | |
| 516-689, gnl|fr1|chrUn (263421688-263421503) | |
| 516-689, gnl|galGal2|chrUn (116908049-116908246) | |
| 516-689, gnl|hg17|chr22 (45066691-45066890) | |
| 516-689, gnl|Hg17|chr22 (45066706-45066879) | |
| 516-689, gnl|mm7|chr15 (85974916-85975115) | |
| 516-689, gnl|Mm7|chr15 (85974931-85975104) | |
| 516-689, gnl|monDom2|scaffold_107 (1355313-1355499) | |
| 516-689, gnl|oryCun1|scaffold_150396 (444-640) | |
| 516-689, gnl|panTro1|chr23 (45381516-45381715) | |
| 516-689, gnl|rheMac2|chr10 (90367352-90367551) | |
| 516-689, gnl|rn3|chr7 (123927321-123927520) | |
| 516-689, gnl|tetNig1|chrUn_random (55619486-55619676) | |
| 516-689, gnl|xenTro1|scaffold_24 (1074411-1074602) | |
| 911-1056, gnl|bosTau2|chr5 (73874352-73874207) | |
| 911-1056, gnl|canFam2|chr10 (22898107-22897929) | |
| 911-1056, gnl|dasNov1|scaffold_37963 (186-10) | |
| 911-1056, gnl|fr1|chrUn (263420892-263420739) | |
| 911-1056, gnl|galGal2|chrUn (116912128-116912282) | |
| 911-1056, gnl|hg17|chr22 (45071835-45072013) | |
| 911-1056, gnl|Hg17|chr22 (45071859-45072004) | |
| 911-1056, gnl|mm7|chr15 (85978704-85978878) | |
| 911-1056, gnl|Mm7|chr15 (85978724-85978869) | |
| 911-1056, gnl|monDom2|scaffold_107 (1357046-1357223) | |
| 911-1056, gnl|oryCun1|scaffold_106843 (3516-3342) | |
| 911-1056, gnl|panTro1|chr23 (45386907-45387085) | |
| 911-1056, gnl|rheMac2|chr10 (90373531-90373709) | |
| 911-1056, gnl|rn3|chr7 (123931152-123931325) | |
| 911-1056, gnl|tetNig1|chrUn_random (55620269-55620418) |