Ss1.1-Pig4-TMW8054D21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATGGTTACAAATGGGATTCGTTTCTGCTGTGCCACAGCAGGAACTCCCAGGACTTAC TTTTCATTGTTACAAGAGGAAAGAGTAGAAAGGAATGAGGCTGAAGGTGTGTTCTTTTAA GCGTGTTGACGTTTTTCTAGGATCTTGCTTAAACAGCTGGTGGTAAAGACTGCTATTCAT ATCTTACCCTGAAAGTGCACGGCTCATGGCTTGGGTTTCTCGATACCATCAGTAATGTCA GTAAGGGAAGTGGTTGCTCTTTCATCCGAGTCACTGGTAGACACTTCAGAAACTATGCTT GGAAAGATGTGCAAAAGCTTATTGTTCTGCTCCAGCATTAATTATTCATCCCACTTGCAG TCACCTGCAAGGATGGATGCTGTTGCCAGCTAGCACTGTACGGTGGGTGTTGTGAAAGAA TCAGGACTGGGGAGGATACTGAAAGGCCTCCATCCTCACCCTTTTATTTCAAAACTCTTG TTAGTTGTGACCCACAAAGGGGAAATGACTTATTTAGGACTACATGTAGCTCATTAGGGG CATAGCTAAGACTAGGCTATCTGAAAGGGTGGCCTTGGAAATGGATTGAAAAAGAGGCCA AGGGGCTCTGTCAGTCACAGTGTTGGTGCTTCACCCTCTTTTCTGCACCTCTCATGGGCT CCGTCTTTTCAGGCGCCCCGATTTCAGATCTGGTTAAGAATACGGAGTTAGGGGATTGTC GGGTGGGGAGGGTGACAGGCAGGGCTGGAAGCATCGGATCCCTGAGATGCTTTGGAGCCC TGAGAATAAGACTGTGACTGTCCCTGGGTGGGGGGACGGGGGCAGAGCTTCCGATCCAGA AATTATCCTGTGGCTTAGGAGAGAGTGAACCGGGATCCCTGTGTCCTGCCAAGACCAGAG GAGGAACAGAGGGGCCTGAGGCTCTAGAAGCTCTGTCTTGTGACCTGGCATCAGGGGAGA CTGTCTGCCTGGCCCGATCTTTGGAGTCATAAGACCGCGAAGGTCCAGTTTTACAAAAGC ATGTTCTCGTCTCTCCCAGTAGAGCTCCTACTCCAGGCTTCTTTCCCCTGCTCCGTTGGG CAGTGCTAAACAACGGGTGGCCCTGATTCTGCTCCAGTGGTGGTTATAATGCTGTCCTTT CTAGCCCCCTTGCAAAATGACTAAAGGGGCTGCAAACCCACCTGTAAGGGTGGCTTTAAA CATTTTGAAGATAGTGGAAGAACCCTGGAAAGTATTGGGAGTAAGACATAATTATAACTA TGCCACAGAAAAAAACAGACTGTTTTGGGTCCTGCCTATCCCCTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATGGTTACAAATGGGATTCGTTTCTGCTGTGCCACAGCAGGAACTCCCAGGACTTAC TTTTCATTGTTACAAGAGGAAAGAGTAGAAAGGAATGAGGCTGAAGGTGTGTTCTTTTAA GCGTGTTGACGTTTTTCTAGGATCTTGCTTAAACAGCTGGTGGTAAAGACTGCTATTCAT ATCTTACCCTGAAAGTGCACGGCTCATGGCTTGGGTTTCTCGATACCATCAGTAATGTCA GTAAGGGAAGTGGTTGCTCTTTCATCCGAGTCACTGGTAGACACTTCAGAAACTATGCTT GGAAAGATGTGCAAAAGCTTATTGTTCTGCTCCAGCATTAATTATTCATCCCACTTGCAG TCACCTGCAAGGATGGATGCTGTTGCCAGCTAGCACTGTACGGTGGGTGTTGTGAAAGAA TCAGGACTGGGGAGGATACTGAAAGGCCTCCATCCTCACCCTTTTATTTCAAAACTCTTG TTAGTTGTGACCCACAAAGGGGAAATGACTTATTTAGGACTACATGTAGCTCATTAGGGG CATAGCTAAGACTAGGCTATCTGAAAGGGTGGCCTTGGAAATGGATTGAAAAAGAGGCCA AGGGGCTCTGTCAGTCACAGTGTTGGTGCTTCACCCTCTTTTCTGCACCTCTCATGGGCT CCGTCTTTTCAGGCGCCCCGATTTCAGATCTGGTTAAGAATACGGAGTTAGGGGATTGTC GGGTGGGGAGGGTGACAGGCAGGGCTGGAAGCATCGGATCCCTGAGATGCTTTGGAGCCC TGAGAATAAGACTGTGACTGTCCCTGGGTGGGGGGACGGGGGCAGAGCTTCCGATCCAGA AATTATCCTGTGGCTTAGGAGAGAGTGAACCGGGATCCCTGTGTCCTGCCAAGACCAGAG GAGGAACAGAGGGGCCTGAGGCTCTAGAAGCTCTGTCTTGTGACCTGGCATCAGGGGAGA CTGTCTGCCTGGCCCGATCTTTGGAGTCATAAGACCGCGAAGGTCCAGTTTTACAAAAGC ATGTTCTCGTCTCTCCCAGTAGAGCTCCTACTCCAGGCTTCTTTCCCCTGCTCCGTTGGG CAGTGCTAAACAACGGGTGGCCCTGATTCTGCTCCAGTGGTGGTTATAATGCTGTCCTTT CTAGCCCCCTTGCAAAATGACTAAAGGGGCTGCAAACCCACCTGTAAGGGTGGCTTTAAA CATTTTGAAGATAGTGGAAGAACCCTGGAAAGTATTGGGAGTAAGACATAATTATAACTA TGCCACAGAAAAAAACAGACTGTTTTGGGTCCTGCCTATCCCCTCCCA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 708-819, - strand, RNAz p=0.525188 | |
| 775-887, + strand, RNAz p=0.700616 | |
| 1187-1305, - strand, RNAz p=0.808932 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 708-819, - strand, RNAz p=0.525188 | |
| 775-887, + strand, RNAz p=0.700616 | |
| 1187-1305, - strand, RNAz p=0.808932 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 56-631, gnl|bosTau2|chr19 (16620525-16621108) | |
| 56-631, gnl|Hg17|chr17 (491391-484305) | |
| 669-1082, gnl|bosTau2|chr19 (16621576-16621963) | |
| 669-1082, gnl|canFam2|chr9 (48451556-48451195) | |
| 669-1082, gnl|dasNov1|scaffold_6003 (4945-4625) | |
| 669-1082, gnl|echTel1|scaffold_285103 (36472-36125) | |
| 669-1082, gnl|hg17|chr17 (483732-484124) | |
| 669-1082, gnl|Hg17|chr17 (484178-483755) | |
| 669-1082, gnl|loxAfr1|scaffold_120656 (5206-5555) | |
| 669-1082, gnl|mm7|chr11 (76204608-76204936) | |
| 669-1082, gnl|Mm7|chr11 (76204991-76204617) | |
| 669-1082, gnl|oryCun1|scaffold_179706 (83026-83381) | |
| 669-1082, gnl|panTro1|chr19 (582504-582896) | |
| 669-1082, gnl|rheMac2|chr16 (436962-437349) | |
| 669-1082, gnl|rn3|chr10 (63496140-63496487) | |
| 1132-1305, gnl|bosTau2|chr19 (16622034-16622205) | |
| 1132-1305, gnl|canFam2|chr9 (48451810-48451614) | |
| 1132-1305, gnl|dasNov1|scaffold_6003 (5759-5567) | |
| 1132-1305, gnl|hg17|chr17 (483461-483654) | |
| 1132-1305, gnl|Hg17|chr17 (483690-483519) | |
| 1132-1305, gnl|loxAfr1|scaffold_120656 (4933-5124) | |
| 1132-1305, gnl|mm7|chr11 (76204363-76204556) | |
| 1132-1305, gnl|Mm7|chr11 (76204574-76204421) | |
| 1132-1305, gnl|monDom2|scaffold_86 (1913285-1913097) | |
| 1132-1305, gnl|oryCun1|scaffold_179706 (82718-82940) | |
| 1132-1305, gnl|panTro1|chr19 (582232-582426) | |
| 1132-1305, gnl|rheMac2|chr16 (436692-436883) | |
| 1132-1305, gnl|xenTro1|scaffold_56 (1570357-1570531) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 56-631, gnl|bosTau2|chr19 (16620525-16621108) | |
| 56-631, gnl|Hg17|chr17 (491391-484305) | |
| 669-1082, gnl|bosTau2|chr19 (16621576-16621963) | |
| 669-1082, gnl|canFam2|chr9 (48451556-48451195) | |
| 669-1082, gnl|dasNov1|scaffold_6003 (4945-4625) | |
| 669-1082, gnl|echTel1|scaffold_285103 (36472-36125) | |
| 669-1082, gnl|hg17|chr17 (483732-484124) | |
| 669-1082, gnl|Hg17|chr17 (484178-483755) | |
| 669-1082, gnl|loxAfr1|scaffold_120656 (5206-5555) | |
| 669-1082, gnl|mm7|chr11 (76204608-76204936) | |
| 669-1082, gnl|Mm7|chr11 (76204991-76204617) | |
| 669-1082, gnl|oryCun1|scaffold_179706 (83026-83381) | |
| 669-1082, gnl|panTro1|chr19 (582504-582896) | |
| 669-1082, gnl|rheMac2|chr16 (436962-437349) | |
| 669-1082, gnl|rn3|chr10 (63496140-63496487) | |
| 1132-1305, gnl|bosTau2|chr19 (16622034-16622205) | |
| 1132-1305, gnl|canFam2|chr9 (48451810-48451614) | |
| 1132-1305, gnl|dasNov1|scaffold_6003 (5759-5567) | |
| 1132-1305, gnl|hg17|chr17 (483461-483654) | |
| 1132-1305, gnl|Hg17|chr17 (483690-483519) | |
| 1132-1305, gnl|loxAfr1|scaffold_120656 (4933-5124) | |
| 1132-1305, gnl|mm7|chr11 (76204363-76204556) | |
| 1132-1305, gnl|Mm7|chr11 (76204574-76204421) | |
| 1132-1305, gnl|monDom2|scaffold_86 (1913285-1913097) | |
| 1132-1305, gnl|oryCun1|scaffold_179706 (82718-82940) | |
| 1132-1305, gnl|panTro1|chr19 (582232-582426) | |
| 1132-1305, gnl|rheMac2|chr16 (436692-436883) | |
| 1132-1305, gnl|xenTro1|scaffold_56 (1570357-1570531) |