Non-Coding RNA Search

Ss1.1-Pig4-TMW8054E06.3

Sequence:


               
               CTGTGCACATGCAGTGCCCTCATTTATTCAAGGTCAGATACAGCGATGCCACCACGCGGA
GCAGTGCACGATGCAGGTGGGGACGAGCGGCAGGTCTCACTGGGCCACTCGGTTTTCCAT
CTGGATGCCATCACACAGATGGACCAACACATGTCCCACGAAGTGCGTGGCCCCGTCATC
CCAGAGCCTCTGGGGACCCGCTGCCCAGCACGCTCAGACACCGGGGCTGATCCCAGACAG
GCTCAGGTGGTCCCTGGGACAAAGGCCCTCCCCGACCCCCCACCCGCTCAGGGTGGGCCC
AGTCCCTTCTCCAGACGTCCCAGGAGCCTCTGTGGGGCAGTGCAGCCCAGCGTGGGTGGT
GAGACGCGTGCCCAGCTCAGCAGTCACTGGTGCCAAGAGTCTTGATCTTCTGGAAGACGC
ACTGCATGACTGAGATCCGGTCCTTATCCTGGATGCTGAAGACCTGGAACTTGTCCAGCA
GGACGTCGAAGTAGGCGGTGGCCCAGTAGGCGGGGTCGCGGGCGGGCAGCTGCAGGAGCG
CCTCGATGCCCCCGCGGATGCGCGGCGGGGGGCTGGGGCCCAGGTGGGTGACGTGGATCC
GCAGGGACGCCTCCGGCTGGCTGGCGAAGCGCTCCACGCGCTGGTAGAGGGCGCCGAGAT
CCAGGTCGGGGTCCTGCAGCAGGTTCCGCTCCGGGGAGAGGAAGTGGGGCAGCTTCCTGG
TGGCCAGACTGCAGAGCAGCACCACCAGCAGCCGGTACACGGCGCCCTGCAGCTCTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGCACATGCAGTGCCCTCATTTATTCAAGGTCAGATACAGCGATGCCACCACGCGGA
GCAGTGCACGATGCAGGTGGGGACGAGCGGCAGGTCTCACTGGGCCACTCGGTTTTCCAT
CTGGATGCCATCACACAGATGGACCAACACATGTCCCACGAAGTGCGTGGCCCCGTCATC
CCAGAGCCTCTGGGGACCCGCTGCCCAGCACGCTCAGACACCGGGGCTGATCCCAGACAG
GCTCAGGTGGTCCCTGGGACAAAGGCCCTCCCCGACCCCCCACCCGCTCAGGGTGGGCCC
AGTCCCTTCTCCAGACGTCCCAGGAGCCTCTGTGGGGCAGTGCAGCCCAGCGTGGGTGGT
GAGACGCGTGCCCAGCTCAGCAGTCACTGGTGCCAAGAGTCTTGATCTTCTGGAAGACGC
ACTGCATGACTGAGATCCGGTCCTTATCCTGGATGCTGAAGACCTGGAACTTGTCCAGCA
GGACGTCGAAGTAGGCGGTGGCCCAGTAGGCGGGGTCGCGGGCGGGCAGCTGCAGGAGCG
CCTCGATGCCCCCGCGGATGCGCGGCGGGGGGCTGGGGCCCAGGTGGGTGACGTGGATCC
GCAGGGACGCCTCCGGCTGGCTGGCGAAGCGCTCCACGCGCTGGTAGAGGGCGCCGAGAT
CCAGGTCGGGGTCCTGCAGCAGGTTCCGCTCCGGGGAGAGGAAGTGGGGCAGCTTCCTGG
TGGCCAGACTGCAGAGCAGCACCACCAGCAGCCGGTACACGGCGCCCTGCAGCTCTGCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61830272|ref|XP_581346.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61830272|ref|XP_581346.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               663-780, - strand, RNAz p=0.614853

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               663-780, - strand, RNAz p=0.614853

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               6-471, gnl|bosTau2|chr3 (83042140-83041692)
               

               
               6-471, gnl|Hg17|chr2 (241546083-241546571)
               


               
               476-780, gnl|bosTau2|chr3 (83041162-83040858)
               

               
               476-780, gnl|Hg17|chr2 (241547705-241548009)
               

               
               476-780, gnl|Mm7|chr1 (93060733-93061036)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-471, gnl|bosTau2|chr3 (83042140-83041692)
               

               
               6-471, gnl|Hg17|chr2 (241546083-241546571)
               


               
               476-780, gnl|bosTau2|chr3 (83041162-83040858)
               

               
               476-780, gnl|Hg17|chr2 (241547705-241548009)
               

               
               476-780, gnl|Mm7|chr1 (93060733-93061036)

	6-471, gnl\|bosTau2\|chr3 (83042140-83041692)
	6-471, gnl\|Hg17\|chr2 (241546083-241546571)

	476-780, gnl\|bosTau2\|chr3 (83041162-83040858)
	476-780, gnl\|Hg17\|chr2 (241547705-241548009)
	476-780, gnl\|Mm7\|chr1 (93060733-93061036)