Non-Coding RNA Search

Ss1.1-Pig4-TMW8054F17.3

Sequence:


               
               GTGGACCAAATCAGGGTCCTACGCCATCTGCAACAGGTATGATGAACAGTCCAGTAAATC
AGCCTGCCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGAATGTTGGCTG
CAGGCAATGGACAGGGGATGATGCCTAATCAAGTCATGAACGGTTCAATTGGAGCAGGCC
GGGGGCGACCTAATATGCAGTACCCAAACCCAGGCCTGGCAAATGCTGGCAACTTAATGA
CTGAGCCCCTGCAGCAAGGCTCTCCCCAGATGGGAGGACAGACAGGATTGAGAGGCCCTC
AGCCTCTTAAGATGGGAATGATGAACAACCCTAATCCTTACGGTTCACCATACACTCAGA
ATTCTGGACAGCAGATGGGAGCCAGTGGCCTTGGTCTCCAGATACCGACAAAGTCTGTAC
TACCAAATAGCTTATCTCCATTTGCAATGGATAAAAAGGCAGTTCCTGGTGGAGGAATGC
CCAACATGGGCCAGCAGCAGGCCCCACCCCCACAGGTCCAGCAGCCAGGTCTGGTGACTC
CAGTAGCCCAAGGGATGGGTTCTGGAGCGCACACGGCTGATCCAGAGAAGCGCAAGCTTA
TCCAGCAGCAGCTTGTTCTCCTCTTGCATGCTCACAAGTGCCAGCGCCGGGAGCAGGCTA
ATGGGGAAGTGAGGCAGTGCAACCTTCCCCACTGTCGTACAATGAAGAACGTCCTTAACC
ACATGACACACTGCCAGTCAGGCAAGTCCTGCCAAGTGGCACACTGTGCATCTTCTCGAC
AAATCATTTCACACTGGAAGAATTGTACAAGGCATGATTGTCCTGTGTGCCTGCCCCTTA
AAAATGCTGGAGATAAGAGAAATCAGCAGTCAATTCTGACTGGCGCACCAGTTGGACTTG
GAAATACTAGCTCTCTAGGAGTGGGTCAGCAGTCTACTCCCAGCCTAAGCACTGTTAGTC
AGATTGACCCCAGCTCCATAGAAAGAGCCTATGCAGCCCTTGGACTACCCTACCAAGTAA
ACCAGATGCCCACACCACCCCAGGTGCAAGCAAAGAGCCAGCAAAACCAGCAGTCTGGGC
AGTCTCCCCAGGGGATGCGGCCCATGAGCAACATGAGTGCTAGTCCTATGGGAGTAAATG
GAGGTGTGGGAGTTCAAACATCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAA
ATTCTCAAAACCCAATGATGAGTGAAAATGCCAGCGTGGCCTCCCTGGGTCCTATGCCAA
CAGCAGCTCAACCATCTAGTACTGGAATTCGGAAACAATGGCATGAAGATATTACTCAGG
ATCTTCGAAATCATCTTGTTCACAAACTTGTTCAAGCCATATTTCCTACTCCGGATCCTG
CTGCTTTAAAAGACAGACGAATGGAAAACCTTGTTGCATATGCCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGACCAAATCAGGGTCCTACGCCATCTGCAACAGGTATGATGAACAGTCCAGTAAATC
AGCCTGCCATGGGAATGAACACAGGGATGAATGCTGGCATGAATCCTGGAATGTTGGCTG
CAGGCAATGGACAGGGGATGATGCCTAATCAAGTCATGAACGGTTCAATTGGAGCAGGCC
GGGGGCGACCTAATATGCAGTACCCAAACCCAGGCCTGGCAAATGCTGGCAACTTAATGA
CTGAGCCCCTGCAGCAAGGCTCTCCCCAGATGGGAGGACAGACAGGATTGAGAGGCCCTC
AGCCTCTTAAGATGGGAATGATGAACAACCCTAATCCTTACGGTTCACCATACACTCAGA
ATTCTGGACAGCAGATGGGAGCCAGTGGCCTTGGTCTCCAGATACCGACAAAGTCTGTAC
TACCAAATAGCTTATCTCCATTTGCAATGGATAAAAAGGCAGTTCCTGGTGGAGGAATGC
CCAACATGGGCCAGCAGCAGGCCCCACCCCCACAGGTCCAGCAGCCAGGTCTGGTGACTC
CAGTAGCCCAAGGGATGGGTTCTGGAGCGCACACGGCTGATCCAGAGAAGCGCAAGCTTA
TCCAGCAGCAGCTTGTTCTCCTCTTGCATGCTCACAAGTGCCAGCGCCGGGAGCAGGCTA
ATGGGGAAGTGAGGCAGTGCAACCTTCCCCACTGTCGTACAATGAAGAACGTCCTTAACC
ACATGACACACTGCCAGTCAGGCAAGTCCTGCCAAGTGGCACACTGTGCATCTTCTCGAC
AAATCATTTCACACTGGAAGAATTGTACAAGGCATGATTGTCCTGTGTGCCTGCCCCTTA
AAAATGCTGGAGATAAGAGAAATCAGCAGTCAATTCTGACTGGCGCACCAGTTGGACTTG
GAAATACTAGCTCTCTAGGAGTGGGTCAGCAGTCTACTCCCAGCCTAAGCACTGTTAGTC
AGATTGACCCCAGCTCCATAGAAAGAGCCTATGCAGCCCTTGGACTACCCTACCAAGTAA
ACCAGATGCCCACACCACCCCAGGTGCAAGCAAAGAGCCAGCAAAACCAGCAGTCTGGGC
AGTCTCCCCAGGGGATGCGGCCCATGAGCAACATGAGTGCTAGTCCTATGGGAGTAAATG
GAGGTGTGGGAGTTCAAACATCGAATCTTCTTTCTGACTCGATGTTGCATTCAGCCATAA
ATTCTCAAAACCCAATGATGAGTGAAAATGCCAGCGTGGCCTCCCTGGGTCCTATGCCAA
CAGCAGCTCAACCATCTAGTACTGGAATTCGGAAACAATGGCATGAAGATATTACTCAGG
ATCTTCGAAATCATCTTGTTCACAAACTTGTTCAAGCCATATTTCCTACTCCGGATCCTG
CTGCTTTAAAAGACAGACGAATGGAAAACCTTGTTGCATATGCCCGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886039|ref|XP_594060.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886039|ref|XP_594060.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               871-1029, - strand, RNAz p=0.979238

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               871-1029, - strand, RNAz p=0.979238

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-314, gnl|bosTau2|chr5 (71008223-71008536)
               

               
               1-314, gnl|Hg17|chr22 (39838018-39838328)
               

               
               1-314, gnl|Mm7|chr15 (81685630-81685943)
               


               
               572-756, gnl|bosTau2|chr25 (3892404-3892220)
               

               
               572-756, gnl|Hg17|chr16 (3783572-3783388)
               

               
               572-756, gnl|Mm7|chr16 (3810494-3810310)
               


               
               871-1118, gnl|bosTau2|chr5 (71017522-71017769)
               

               
               871-1118, gnl|Hg17|chr22 (39851892-39852139)
               

               
               871-1118, gnl|Mm7|chr15 (81697565-81697812)
               


               
               1202-1348, gnl|bosTau2|chr5 (71020762-71020908)
               

               
               1202-1348, gnl|Hg17|chr22 (39858148-39858294)
               

               
               1202-1348, gnl|Mm7|chr15 (81701112-81701258)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-314, gnl|bosTau2|chr5 (71008223-71008536)
               

               
               1-314, gnl|Hg17|chr22 (39838018-39838328)
               

               
               1-314, gnl|Mm7|chr15 (81685630-81685943)
               


               
               572-756, gnl|bosTau2|chr25 (3892404-3892220)
               

               
               572-756, gnl|Hg17|chr16 (3783572-3783388)
               

               
               572-756, gnl|Mm7|chr16 (3810494-3810310)
               


               
               871-1118, gnl|bosTau2|chr5 (71017522-71017769)
               

               
               871-1118, gnl|Hg17|chr22 (39851892-39852139)
               

               
               871-1118, gnl|Mm7|chr15 (81697565-81697812)
               


               
               1202-1348, gnl|bosTau2|chr5 (71020762-71020908)
               

               
               1202-1348, gnl|Hg17|chr22 (39858148-39858294)
               

               
               1202-1348, gnl|Mm7|chr15 (81701112-81701258)

	1-314, gnl\|bosTau2\|chr5 (71008223-71008536)
	1-314, gnl\|Hg17\|chr22 (39838018-39838328)
	1-314, gnl\|Mm7\|chr15 (81685630-81685943)

	572-756, gnl\|bosTau2\|chr25 (3892404-3892220)
	572-756, gnl\|Hg17\|chr16 (3783572-3783388)
	572-756, gnl\|Mm7\|chr16 (3810494-3810310)

	871-1118, gnl\|bosTau2\|chr5 (71017522-71017769)
	871-1118, gnl\|Hg17\|chr22 (39851892-39852139)
	871-1118, gnl\|Mm7\|chr15 (81697565-81697812)

	1202-1348, gnl\|bosTau2\|chr5 (71020762-71020908)
	1202-1348, gnl\|Hg17\|chr22 (39858148-39858294)
	1202-1348, gnl\|Mm7\|chr15 (81701112-81701258)