Non-Coding RNA Search

Ss1.1-Pig4-TMW8054F19.5

Sequence:


               
               GGCACCAGAAAATGTCTTCAGCTGTTAATGGAGTTGAGGAAGAATGGGGACATTGAGTCT
GATTTCCTTACAGATTGTAGATGCTTGGTAATCAGACATATTGGTTGCTGAGAGGTGCGG
AATTGGGAATAGCACAAGGAGCCCTGGAGAGGCTCCAGATCTGTGAGTTTCTGTTGGATC
CCGGGGAGTCCTGTCAGAGCGTTAGAGTTCACCAAGCCCTGTGGACTTCCGGAGAACTTC
TGGAGGATTCAGCTGCATTGCCTCACCGTTAGCCTTCTGAAGGGGCAGAGCAACCCTGGG
GCTGGACTCTGGGCTCCGTTGTAGGCACAACAGCTTCTCCTTGAGGAAGGAGTGGAAATG
CTTGCAGATGCCGCACTTTATTTGACATGCCTCCCGTTCTGAAATTTCCTGAAACTTATA
TTTCTGATTTTTTTTTTTTTTCTTGCAGATCTTTATCCCCATTTTACAAGGCCTGGCTCT
TGCCGCCAAAGAGTGCTCCCTCGATAGCGACTACTTTAAATACCCCCTCATGGTAAAACT
TTGTTCTTTTTCTTGTAACCCATTCAGTAGATGTTTTTCTAACAGACGGTTTGAACATCC
ACGTTTCTTTCAGGTCCATGATCAGCCTTGTTTTCATATTTAGAGCAAGAATCACCGTGC
TGGCCGGGCCCGGTGTTCAGTGCGCAGTGAGACACATCAGCGAAGACAGTTAGCAGCCCG
GGGCTTCCTCCACCATCCGGGTCCTGGACAGGAGTCAGTGATGCAGGCACTGAGATGCCC
TTTGCCTTACTCTGCAGCTTATGAAAGTGATAATTATTGGTGATAGCCTCCTGATTCTCC
TAGCAACAAGCATATCATATTTGGGATGAAATTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCACCAGAAAATGTCTTCAGCTGTTAATGGAGTTGAGGAAGAATGGGGACATTGAGTCT
GATTTCCTTACAGATTGTAGATGCTTGGTAATCAGACATATTGGTTGCTGAGAGGTGCGG
AATTGGGAATAGCACAAGGAGCCCTGGAGAGGCTCCAGATCTGTGAGTTTCTGTTGGATC
CCGGGGAGTCCTGTCAGAGCGTTAGAGTTCACCAAGCCCTGTGGACTTCCGGAGAACTTC
TGGAGGATTCAGCTGCATTGCCTCACCGTTAGCCTTCTGAAGGGGCAGAGCAACCCTGGG
GCTGGACTCTGGGCTCCGTTGTAGGCACAACAGCTTCTCCTTGAGGAAGGAGTGGAAATG
CTTGCAGATGCCGCACTTTATTTGACATGCCTCCCGTTCTGAAATTTCCTGAAACTTATA
TTTCTGATTTTTTTTTTTTTTCTTGCAGATCTTTATCCCCATTTTACAAGGCCTGGCTCT
TGCCGCCAAAGAGTGCTCCCTCGATAGCGACTACTTTAAATACCCCCTCATGGTAAAACT
TTGTTCTTTTTCTTGTAACCCATTCAGTAGATGTTTTTCTAACAGACGGTTTGAACATCC
ACGTTTCTTTCAGGTCCATGATCAGCCTTGTTTTCATATTTAGAGCAAGAATCACCGTGC
TGGCCGGGCCCGGTGTTCAGTGCGCAGTGAGACACATCAGCGAAGACAGTTAGCAGCCCG
GGGCTTCCTCCACCATCCGGGTCCTGGACAGGAGTCAGTGATGCAGGCACTGAGATGCCC
TTTGCCTTACTCTGCAGCTTATGAAAGTGATAATTATTGGTGATAGCCTCCTGATTCTCC
TAGCAACAAGCATATCATATTTGGGATGAAATTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-111, + strand, RNAz p=0.90265

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-111, + strand, RNAz p=0.90265

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-876, gnl|bosTau2|chr16 (31245685-31246567)
               

               
               2-876, gnl|Hg17|chr1 (10120642-10121520)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-876, gnl|bosTau2|chr16 (31245685-31246567)
               

               
               2-876, gnl|Hg17|chr1 (10120642-10121520)

	2-876, gnl\|bosTau2\|chr16 (31245685-31246567)
	2-876, gnl\|Hg17\|chr1 (10120642-10121520)