Non-Coding RNA Search

Ss1.1-Pig4-TMW8054I07.5

Sequence:


               
               ACAGTGGGTGCTCAATAAATACAAGTTGCAATGAATTGAGTGAGCTTTGGAAGGGATAAA
AAGGATGAATTATAGCCCATGCAGGAATTTTCTAGTTAGAGAAGATGAAACATATAGTGA
TCATTTTATCAAGTCTCTGAATAAAATCCTGGTATAGGTGTCTCTAAAGAAAGGTCCAGA
GACAGAGTATATATAGCTGTTAGGTATGATGTTGATTTGAGCATGGTGGACAGTGCAAAT
GAGAAATTCATTTTTTTCCACCGTCTCTCATCTCACGCCCTTGGTCCTTTTCAGTTGTTT
AATTTCTATTTCATTACTTGAACTAACATATAAAATGTTTATCACTTTTGTATTTCAGTT
CTGACTAATGTCTGTTTTTGTTATATGGTTAACTGTGGCTTGAAAACAATTGCGAAAAAT
CACAGTGTGTTCTGGCTTTTGATCCCTATAGGTGATTTTCAATAAGCAGCAGAAGGATAT
ATATATATATATATATATATATCAGTTTTCTAGGTAGCTTTATATAATTATGGGAAAATT
AATGCCTTGAGGCTTTCAGTAACTGAGATTTTGAATAATTTGTTTTAAGGTTACTATTCT
TTTGTGGTTTCAGTGGCTGTTCCAGAAATCTTAAGTTATTGCCTATGGGTCATTTAAAGT
CACTGTTGGATCATGTGTTATGGTTCTTAATTGTAGGGAGGATGATGCAGAAAAGAAAGT
GCTAGAAAATAAACAGGGGATTTTCCTTGGAAAATTATAAAAATGGGGGCAATAAGCCAA
ACAACTTGAGCCCGCCTGATATCTCACTGCTTCCATTCAAAATATACTGCATGGCACTCA
CTGTAATATCTGTCTTTTCAGAGTCAACACTGACTCCCCAAATTTGAGAGAATAAAAATC
ACCAGCATATCGTGAAAACATGGCTTTTAAATGATTTCTGAATCAGTGTTTCTCAAAGGT
ACTTGTCATGGATTGTTTTAATGTCGTAAAGTCATCACATACTAGAGTCAGCATTAAAAA
GGTGTTTACTGCTTCTGGTCATTAGCAAGCATTTGCTTGAGCAATCCCTGCCTTGTAGCA
GTTTATCATCGAATGCTGCCAAGATATCCTGCTCACATACAGCAAGGTAAAAATCATCAA
ACCCATACGTAGGCATTTAATAACTGTCTCTTCCTGTGTGTCATATCTTTATAGGCCCGT
TTTCAGTTTATATCCTTCTTTAAGGATATTTAGCATATAGATGCCATCACTGTGATTCCT
TTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTGGGTGCTCAATAAATACAAGTTGCAATGAATTGAGTGAGCTTTGGAAGGGATAAA
AAGGATGAATTATAGCCCATGCAGGAATTTTCTAGTTAGAGAAGATGAAACATATAGTGA
TCATTTTATCAAGTCTCTGAATAAAATCCTGGTATAGGTGTCTCTAAAGAAAGGTCCAGA
GACAGAGTATATATAGCTGTTAGGTATGATGTTGATTTGAGCATGGTGGACAGTGCAAAT
GAGAAATTCATTTTTTTCCACCGTCTCTCATCTCACGCCCTTGGTCCTTTTCAGTTGTTT
AATTTCTATTTCATTACTTGAACTAACATATAAAATGTTTATCACTTTTGTATTTCAGTT
CTGACTAATGTCTGTTTTTGTTATATGGTTAACTGTGGCTTGAAAACAATTGCGAAAAAT
CACAGTGTGTTCTGGCTTTTGATCCCTATAGGTGATTTTCAATAAGCAGCAGAAGGATAT
ATATATATATATATATATATATCAGTTTTCTAGGTAGCTTTATATAATTATGGGAAAATT
AATGCCTTGAGGCTTTCAGTAACTGAGATTTTGAATAATTTGTTTTAAGGTTACTATTCT
TTTGTGGTTTCAGTGGCTGTTCCAGAAATCTTAAGTTATTGCCTATGGGTCATTTAAAGT
CACTGTTGGATCATGTGTTATGGTTCTTAATTGTAGGGAGGATGATGCAGAAAAGAAAGT
GCTAGAAAATAAACAGGGGATTTTCCTTGGAAAATTATAAAAATGGGGGCAATAAGCCAA
ACAACTTGAGCCCGCCTGATATCTCACTGCTTCCATTCAAAATATACTGCATGGCACTCA
CTGTAATATCTGTCTTTTCAGAGTCAACACTGACTCCCCAAATTTGAGAGAATAAAAATC
ACCAGCATATCGTGAAAACATGGCTTTTAAATGATTTCTGAATCAGTGTTTCTCAAAGGT
ACTTGTCATGGATTGTTTTAATGTCGTAAAGTCATCACATACTAGAGTCAGCATTAAAAA
GGTGTTTACTGCTTCTGGTCATTAGCAAGCATTTGCTTGAGCAATCCCTGCCTTGTAGCA
GTTTATCATCGAATGCTGCCAAGATATCCTGCTCACATACAGCAAGGTAAAAATCATCAA
ACCCATACGTAGGCATTTAATAACTGTCTCTTCCTGTGTGTCATATCTTTATAGGCCCGT
TTTCAGTTTATATCCTTCTTTAAGGATATTTAGCATATAGATGCCATCACTGTGATTCCT
TTTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               841-955, - strand, RNAz p=0.871141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               841-955, - strand, RNAz p=0.871141

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               804-1264, gnl|bosTau2|chr15 (41609014-41608546)
               

               
               804-1264, gnl|Hg17|chr4 (102448292-102447857)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               804-1264, gnl|bosTau2|chr15 (41609014-41608546)
               

               
               804-1264, gnl|Hg17|chr4 (102448292-102447857)

	804-1264, gnl\|bosTau2\|chr15 (41609014-41608546)
	804-1264, gnl\|Hg17\|chr4 (102448292-102447857)