Non-Coding RNA Search

Ss1.1-Pig4-TMW8054J06.5

Sequence:


               
               GGCGCTGCCGGCGCGCCGCACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCG
TCAGGCGCGGGGGAGCCAGGCACCAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTC
ACCGAGCTGCAGCTGATGGGCCTAGAGAAACGCTTTGAGAAGCAGAAGTACCTCTCCACG
CCGGACAGAATAGATCTCGCCGAGTCCCTGGGTCTGAGCCAGTTGCAGGTGAAGACATGG
TACCAGAATCGAAGGATGAAGTGGAAGAAAATAGTGCTGCAGGGCGGCGGCCTGGAGTCT
CCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATACCCACGAGCGAGCAGCTCACG
GAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGTTGGGAGAGGCCGGCGAC
CGGAGCCACGAGGACTGAGAGCCGCTGAGGGTGCGGACACGGGGACTCCCGCCCCCTGCA
GTCCGCGGCCCCCACAACTCGCAGGATGCCGCGAGTCGGCCCTTCCGCGTTCACGCCATT
TGCTTTCTAAACTTTTTATTATTACTTTGAATGCGGACAGTTAGGGGCCAAACCAGGAAG
GACAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACTC
ACGTCCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCAC
GCGCATTCACGCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGC
CGGGACGCCTCCAGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGC
CGCAAATGGCCCAACATGGCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTC
TTACGAAGACGGTGATTTTTTTTTCCAATAAAATATTTTTATGATACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCTGCCGGCGCGCCGCACCTGCCGCTCGAACTGCAGCTCCGCGGGAAGTTGGAGTCG
TCAGGCGCGGGGGAGCCAGGCACCAAGGCCAAGAAGGGGCGTCGGAGCCGCACTGTGTTC
ACCGAGCTGCAGCTGATGGGCCTAGAGAAACGCTTTGAGAAGCAGAAGTACCTCTCCACG
CCGGACAGAATAGATCTCGCCGAGTCCCTGGGTCTGAGCCAGTTGCAGGTGAAGACATGG
TACCAGAATCGAAGGATGAAGTGGAAGAAAATAGTGCTGCAGGGCGGCGGCCTGGAGTCT
CCCACCAAGCCCAAGGGGAGGCCCAAGAAGAACTCCATACCCACGAGCGAGCAGCTCACG
GAACAGGAGCGCGCCAAAGAAGCAGAGAAGCCGGCCGAGGCGTTGGGAGAGGCCGGCGAC
CGGAGCCACGAGGACTGAGAGCCGCTGAGGGTGCGGACACGGGGACTCCCGCCCCCTGCA
GTCCGCGGCCCCCACAACTCGCAGGATGCCGCGAGTCGGCCCTTCCGCGTTCACGCCATT
TGCTTTCTAAACTTTTTATTATTACTTTGAATGCGGACAGTTAGGGGCCAAACCAGGAAG
GACAGACCCTGAAGCCAATCCCAGGCCCCAGTGCGCTCGCGGGCTCTTGTCTGGAAACTC
ACGTCCAGCGTCAACGGAAGGCAGTCCCCGCCCGGGGCTCCGCGGCGCCCGGCGCTCCAC
GCGCATTCACGCCCCGCTCCTCTCCTGCACCCCCACTAGCCTGGAGCCGGCCCCCGGGGC
CGGGACGCCTCCAGGCACACACCCGCTTCCGCGAGTCGGACCCCGCGGCCCGGCGCCGGC
CGCAAATGGCCCAACATGGCGCCCGGACAACCCGACGTCGCTGGGGCCCCTACCCCTCTC
TTACGAAGACGGTGATTTTTTTTTCCAATAAAATATTTTTATGATACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q96GH8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96GH8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-591, - strand, RNAz p=0.736692

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-591, - strand, RNAz p=0.736692

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-188, gnl|bosTau2|chr7 (22319069-22318882)
               

               
               1-188, gnl|Hg17|chr9 (93794920-93794733)
               

               
               1-188, gnl|Mm7|chr13 (48147949-48148136)
               


               
               274-948, gnl|bosTau2|chr7 (22318298-22317632)
               

               
               274-948, gnl|Hg17|chr9 (93794165-93793465)
               

               
               274-948, gnl|Mm7|chr13 (48148647-48149326)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-188, gnl|bosTau2|chr7 (22319069-22318882)
               

               
               1-188, gnl|Hg17|chr9 (93794920-93794733)
               

               
               1-188, gnl|Mm7|chr13 (48147949-48148136)
               


               
               274-948, gnl|bosTau2|chr7 (22318298-22317632)
               

               
               274-948, gnl|Hg17|chr9 (93794165-93793465)
               

               
               274-948, gnl|Mm7|chr13 (48148647-48149326)

	1-188, gnl\|bosTau2\|chr7 (22319069-22318882)
	1-188, gnl\|Hg17\|chr9 (93794920-93794733)
	1-188, gnl\|Mm7\|chr13 (48147949-48148136)

	274-948, gnl\|bosTau2\|chr7 (22318298-22317632)
	274-948, gnl\|Hg17\|chr9 (93794165-93793465)
	274-948, gnl\|Mm7\|chr13 (48148647-48149326)