Non-Coding RNA Search

Ss1.1-Pig4-TMW8054M08.3

Sequence:


               
               TTTTTTTTTTTATGTTTCCAATATGACCTTTATTGAGCAAATACTGCTGTGACGTTTAAC
ATCAATCAACGGAAAAGTTGCAAACTGTGCATGTCCTTTGGCTTCTCCTCCTTTTTCTCT
ACCTTCTCTTCCTTGGGAGATTCCTTTGCTGCTTCTTTCTTTTCTTCCTCCACTTTCTCG
ACTTCCTCTTTCTGCTCTCCTTTCCCAACTCCAGCTTCTGCTTTGGGTTTCACCTCTTCC
ACCGGTGATTTTGACACCGGTGACTTGGCTTTTTCTGGCTTCTCCACCTTGGCTTCTGCC
ACCAGCTCCTCCTTGGGAGCCACTTCCTCACGCTTCTCCTCCACTTTCTTTTCCTCCTTA
GCCTCTGCTTCCTCCCCTTCACCTTCAGCCTCAATTTCTCCTTCCTCTTCCTGCTCACCT
TCCTCTTTTTCACTAGAAACTTCCTTCTCAGATCCTCCCTCTTCGGCTTGGTCTGATTTA
GCGCCCTCCTCTTCTTCCTCCTCTTCTTCCTCTTGGCCTTCTCCCTCCTCCTTTTCTCCT
TCCTCCTCTCCTTTAAGTTCAGGTGCAGCAGCTTTCACCGGAGACTTCTTCGCAGCTACA
ACTTCTTCAGCTTCTTGTTTCTCTTCCTTTTCTTCAGCCTCTTCTTCCTTGACCTCCTCT
TTCATGGAAACTGCCAATTCCTCTGCAATGGCAGTCAGGGCTTCTTCCATTTCTGACTTC
TCATCCTCCACCTTGGTTTCCTCTATGATCTCCTCAACAAATTTGTGTTGGACCTTTAGC
TTGGGAGCCTCCACCTTGGTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTATGTTTCCAATATGACCTTTATTGAGCAAATACTGCTGTGACGTTTAAC
ATCAATCAACGGAAAAGTTGCAAACTGTGCATGTCCTTTGGCTTCTCCTCCTTTTTCTCT
ACCTTCTCTTCCTTGGGAGATTCCTTTGCTGCTTCTTTCTTTTCTTCCTCCACTTTCTCG
ACTTCCTCTTTCTGCTCTCCTTTCCCAACTCCAGCTTCTGCTTTGGGTTTCACCTCTTCC
ACCGGTGATTTTGACACCGGTGACTTGGCTTTTTCTGGCTTCTCCACCTTGGCTTCTGCC
ACCAGCTCCTCCTTGGGAGCCACTTCCTCACGCTTCTCCTCCACTTTCTTTTCCTCCTTA
GCCTCTGCTTCCTCCCCTTCACCTTCAGCCTCAATTTCTCCTTCCTCTTCCTGCTCACCT
TCCTCTTTTTCACTAGAAACTTCCTTCTCAGATCCTCCCTCTTCGGCTTGGTCTGATTTA
GCGCCCTCCTCTTCTTCCTCCTCTTCTTCCTCTTGGCCTTCTCCCTCCTCCTTTTCTCCT
TCCTCCTCTCCTTTAAGTTCAGGTGCAGCAGCTTTCACCGGAGACTTCTTCGCAGCTACA
ACTTCTTCAGCTTCTTGTTTCTCTTCCTTTTCTTCAGCCTCTTCTTCCTTGACCTCCTCT
TTCATGGAAACTGCCAATTCCTCTGCAATGGCAGTCAGGGCTTCTTCCATTTCTGACTTC
TCATCCTCCACCTTGGTTTCCTCTATGATCTCCTCAACAAATTTGTGTTGGACCTTTAGC
TTGGGAGCCTCCACCTTGGTTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UK51_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UK51_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-750, - strand, RNAz p=0.999372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-750, - strand, RNAz p=0.999372

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               661-750, CJ472498 macaque brain cDNA library QorA Macaca fascicularis cDNA 
(dbj|CJ472498.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA352830 BRSSN2 Homo sapiens cDNA clone BRSSN2016242 5', mRNA 
(dbj|DA352830.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA695147 NT2NE2 Homo sapiens cDNA clone NT2NE2015784 5', mRNA 
(dbj|DA695147.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA696943 NT2NE2 Homo sapiens cDNA clone NT2NE2018031 5', mRNA 
(dbj|DA696943.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA701949 NT2RI2 Homo sapiens cDNA clone NT2RI2004727 5', mRNA 
(dbj|DA701949.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DB166804 TKIDN2 Homo sapiens cDNA clone TKIDN2000074 5', mRNA 
(dbj|DB166804.1|), blast E-value=3e-30, identity=94.44%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               661-750, CJ472498 macaque brain cDNA library QorA Macaca fascicularis cDNA 
(dbj|CJ472498.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA352830 BRSSN2 Homo sapiens cDNA clone BRSSN2016242 5', mRNA 
(dbj|DA352830.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA695147 NT2NE2 Homo sapiens cDNA clone NT2NE2015784 5', mRNA 
(dbj|DA695147.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA696943 NT2NE2 Homo sapiens cDNA clone NT2NE2018031 5', mRNA 
(dbj|DA696943.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DA701949 NT2RI2 Homo sapiens cDNA clone NT2RI2004727 5', mRNA 
(dbj|DA701949.1|), blast E-value=3e-30, identity=94.44% 
               

               
               661-750, DB166804 TKIDN2 Homo sapiens cDNA clone TKIDN2000074 5', mRNA 
(dbj|DB166804.1|), blast E-value=3e-30, identity=94.44%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               244-804, gnl|bosTau2|chr8 (32236771-32237334)
               

               
               244-804, gnl|Hg17|chr8 (24831135-24830584)
               

               
               244-804, gnl|Mm7|chr14 (62979438-62979954)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-804, gnl|bosTau2|chr8 (32236771-32237334)
               

               
               244-804, gnl|Hg17|chr8 (24831135-24830584)
               

               
               244-804, gnl|Mm7|chr14 (62979438-62979954)

	661-750, CJ472498 macaque brain cDNA library QorA Macaca fascicularis cDNA (dbj\|CJ472498.1\|), blast E-value=3e-30, identity=94.44%
	661-750, DA352830 BRSSN2 Homo sapiens cDNA clone BRSSN2016242 5', mRNA (dbj\|DA352830.1\|), blast E-value=3e-30, identity=94.44%
	661-750, DA695147 NT2NE2 Homo sapiens cDNA clone NT2NE2015784 5', mRNA (dbj\|DA695147.1\|), blast E-value=3e-30, identity=94.44%
	661-750, DA696943 NT2NE2 Homo sapiens cDNA clone NT2NE2018031 5', mRNA (dbj\|DA696943.1\|), blast E-value=3e-30, identity=94.44%
	661-750, DA701949 NT2RI2 Homo sapiens cDNA clone NT2RI2004727 5', mRNA (dbj\|DA701949.1\|), blast E-value=3e-30, identity=94.44%
	661-750, DB166804 TKIDN2 Homo sapiens cDNA clone TKIDN2000074 5', mRNA (dbj\|DB166804.1\|), blast E-value=3e-30, identity=94.44%

	244-804, gnl\|bosTau2\|chr8 (32236771-32237334)
	244-804, gnl\|Hg17\|chr8 (24831135-24830584)
	244-804, gnl\|Mm7\|chr14 (62979438-62979954)