Non-Coding RNA Search

Ss1.1-Pig4-TMW8054M12.3

Sequence:


               
               TTTGGGCCATCAGGGGATCCACTCCTACTGTTACAGAAGTCTCCCCCACTAATGTAGTAG
GCAGCTCCTGTGCTACCGTATTATAGGACTCCAGCGCTGTCGTCGAGGGCACCTCCAGGG
ACTGCGACACGGTCATCGTTGACAGCTCCGTTGTTGTCACCACAGACTGAACAGAGATCT
CCAGCGCCACAGTTGCCACAGGCTGCCCGGGCAACTCTGGCGCCCCAGGCTGCCCTGGCA
ACTCAAGCACCCCTGTTGCCAAAGGCTGCCCCAAAAGCTCCAGTGCTCCAGCTGCCCCAG
ATTGCCCCGAGAACTCCAGTGCCCCAGTTGCCATGAGCTGCCCAGGCAACTCCAGTGCCC
CAGTCGCCACAGGCTGCCCTGACAACTCCAGTGCCCTAGTTGCCGAAGGCAGCCCTGGCA
ACTCTGGCACCCCAGTCACCGAAGGCTGCCCTGGCAACTCCAGCGCTGTTGTTGCCACTG
GCTGTCCTGGCAACTCCAGCACCATTGCTGCCTCAGGCTGCCCCAGCAACCCTGTTGCCG
TCGTCACCTCAGGTTGCCCAGGATGTTCCACCGTTGTCATCCCCACAGGGTGCTCCAACT
CTGTTGTCGTCACAGGTTGTTCGGTCAACTCCATTGCTACTGTTACCACAGGTTGCCCTG
GCAACTCTACTGCAGCTGTCACTGCAGGGAGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGGCCATCAGGGGATCCACTCCTACTGTTACAGAAGTCTCCCCCACTAATGTAGTAG
GCAGCTCCTGTGCTACCGTATTATAGGACTCCAGCGCTGTCGTCGAGGGCACCTCCAGGG
ACTGCGACACGGTCATCGTTGACAGCTCCGTTGTTGTCACCACAGACTGAACAGAGATCT
CCAGCGCCACAGTTGCCACAGGCTGCCCGGGCAACTCTGGCGCCCCAGGCTGCCCTGGCA
ACTCAAGCACCCCTGTTGCCAAAGGCTGCCCCAAAAGCTCCAGTGCTCCAGCTGCCCCAG
ATTGCCCCGAGAACTCCAGTGCCCCAGTTGCCATGAGCTGCCCAGGCAACTCCAGTGCCC
CAGTCGCCACAGGCTGCCCTGACAACTCCAGTGCCCTAGTTGCCGAAGGCAGCCCTGGCA
ACTCTGGCACCCCAGTCACCGAAGGCTGCCCTGGCAACTCCAGCGCTGTTGTTGCCACTG
GCTGTCCTGGCAACTCCAGCACCATTGCTGCCTCAGGCTGCCCCAGCAACCCTGTTGCCG
TCGTCACCTCAGGTTGCCCAGGATGTTCCACCGTTGTCATCCCCACAGGGTGCTCCAACT
CTGTTGTCGTCACAGGTTGTTCGGTCAACTCCATTGCTACTGTTACCACAGGTTGCCCTG
GCAACTCTACTGCAGCTGTCACTGCAGGGAGGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-601, - strand, RNAz p=0.996354

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-601, - strand, RNAz p=0.996354

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               317-574, - strand, RNAmicro p=0.999993
               

               
               327-521, + strand, RNAmicro p=0.997974

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               317-574, - strand, RNAmicro p=0.999993
               

               
               327-521, + strand, RNAmicro p=0.997974

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               254-601, DA190912 BRAMY3 Homo sapiens cDNA clone BRAMY3013547 5', mRNA 
(dbj|DA190912.1|), blast E-value=0, identity=95.98% 
               

               
               122-579, DA335923 BRHIP3 Homo sapiens cDNA clone BRHIP3036131 5', mRNA 
(dbj|DA335923.1|), blast E-value=0, identity=96.51% 
               

               
               147-601, DA739582 NT2RP7 Homo sapiens cDNA clone NT2RP7001220 5', mRNA 
(dbj|DA739582.1|), blast E-value=0, identity=96.26% 
               

               
               128-588, DA803846 OCBBF3 Homo sapiens cDNA clone OCBBF3008778 5', mRNA 
(dbj|DA803846.1|), blast E-value=0, identity=96.31% 
               

               
               222-601, CR976367 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017J0736 5', 
(emb|CR976367.1|), blast E-value=0, identity=96.05% 
               

               
               131-601, zp24d03.s1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA 
(gb|AA171924.1|), blast E-value=0, identity=92.07%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               254-601, DA190912 BRAMY3 Homo sapiens cDNA clone BRAMY3013547 5', mRNA 
(dbj|DA190912.1|), blast E-value=0, identity=95.98% 
               

               
               122-579, DA335923 BRHIP3 Homo sapiens cDNA clone BRHIP3036131 5', mRNA 
(dbj|DA335923.1|), blast E-value=0, identity=96.51% 
               

               
               147-601, DA739582 NT2RP7 Homo sapiens cDNA clone NT2RP7001220 5', mRNA 
(dbj|DA739582.1|), blast E-value=0, identity=96.26% 
               

               
               128-588, DA803846 OCBBF3 Homo sapiens cDNA clone OCBBF3008778 5', mRNA 
(dbj|DA803846.1|), blast E-value=0, identity=96.31% 
               

               
               222-601, CR976367 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017J0736 5', 
(emb|CR976367.1|), blast E-value=0, identity=96.05% 
               

               
               131-601, zp24d03.s1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA 
(gb|AA171924.1|), blast E-value=0, identity=92.07%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-696, gnl|bosTau2|chr1 (1298347-1297656)
               

               
               2-696, gnl|Hg17|chr21 (33845540-33844846)
               

               
               2-696, gnl|Mm7|chr16 (91706830-91706136)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-696, gnl|bosTau2|chr1 (1298347-1297656)
               

               
               2-696, gnl|Hg17|chr21 (33845540-33844846)
               

               
               2-696, gnl|Mm7|chr16 (91706830-91706136)

	317-574, - strand, RNAmicro p=0.999993
	327-521, + strand, RNAmicro p=0.997974

	254-601, DA190912 BRAMY3 Homo sapiens cDNA clone BRAMY3013547 5', mRNA (dbj\|DA190912.1\|), blast E-value=0, identity=95.98%
	122-579, DA335923 BRHIP3 Homo sapiens cDNA clone BRHIP3036131 5', mRNA (dbj\|DA335923.1\|), blast E-value=0, identity=96.51%
	147-601, DA739582 NT2RP7 Homo sapiens cDNA clone NT2RP7001220 5', mRNA (dbj\|DA739582.1\|), blast E-value=0, identity=96.26%
	128-588, DA803846 OCBBF3 Homo sapiens cDNA clone OCBBF3008778 5', mRNA (dbj\|DA803846.1\|), blast E-value=0, identity=96.31%
	222-601, CR976367 RZPD no.9017 Homo sapiens cDNA clone RZPDp9017J0736 5', (emb\|CR976367.1\|), blast E-value=0, identity=96.05%
	131-601, zp24d03.s1 Stratagene neuroepithelium (#937231) Homo sapiens cDNA (gb\|AA171924.1\|), blast E-value=0, identity=92.07%

	2-696, gnl\|bosTau2\|chr1 (1298347-1297656)
	2-696, gnl\|Hg17\|chr21 (33845540-33844846)
	2-696, gnl\|Mm7\|chr16 (91706830-91706136)