Non-Coding RNA Search

Ss1.1-Pig4-TMW8054N06.5

Sequence:


               
               GTTCCAGGGAGAGCTCAGGGCAGTCCTGGGATGGATCTGGGGTCAGGCAGAAGCTGCAGT
TGGGAGGACTCGGAGACCACCTTCCAGCTGTGGCTGCAGCTGCTTCTCTGGGGCCACCTG
ATTGTCCGTTTCCTGAGCTACCTGCGCCATACCCTCTGGGCACCTAAGCCACAGCCAGCA
CCCTGAGCCTCCCTGGCCAGGAGCAGATGGGCCCCAGATCACCCCATCCCATTCCACCAC
CCCCCTCCCACTGTACCCTCTGCTGGGAGGGGCAGGAAGCAGAGGTGAGTATGGGGGCTC
TGGGCTGGGGTTCCCCCATCATTATCCCTCTTTATCTGCCCACTTTCCGGGTACTGCCAC
ACCCTGTGCCCCATCCCCAGATCTGGAAAGCTGATGGCACCAGAGAGAACACAGCCTGGG
CCTTTCCATACTTTGAAAGGCCAGACCAGGGGTGTTTAGGGTCAAGGCACCCTGTAGAGC
CTCTTAGTGGGGTACCAGCAACAGAGGCACAGACACACCAGGTCTGGGGTGGGGGGTGCG
GAGTGAAGCAGGATGCGGCTGTACTCAGGGACAGCTGGAAGCAGAAGGGGAAGCAGGACC
AGGCTTCCTCCTGGATTCCTACCAAACCCACCCCTCTCTGCCTCCGAGGGCAGGTGACAG
TAGGGTCCCAAGAGGGACGTTCACTCCCACCTTCATCCAGAATTCAACGTGGATGTTTGG
CGTTTTCCAAGGAAGTTGTTGTGTGTCCAAAAAAATGGTGCCTTGTGGCGTTAAAGATCC
AGCATTGCCACTGCAGAGGCTCAGGTTGCAGCTGTGGTGCAGGTTCAGTCCTGGGCCCAG
GAACTTCCACATGCCACAAGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCAGGGAGAGCTCAGGGCAGTCCTGGGATGGATCTGGGGTCAGGCAGAAGCTGCAGT
TGGGAGGACTCGGAGACCACCTTCCAGCTGTGGCTGCAGCTGCTTCTCTGGGGCCACCTG
ATTGTCCGTTTCCTGAGCTACCTGCGCCATACCCTCTGGGCACCTAAGCCACAGCCAGCA
CCCTGAGCCTCCCTGGCCAGGAGCAGATGGGCCCCAGATCACCCCATCCCATTCCACCAC
CCCCCTCCCACTGTACCCTCTGCTGGGAGGGGCAGGAAGCAGAGGTGAGTATGGGGGCTC
TGGGCTGGGGTTCCCCCATCATTATCCCTCTTTATCTGCCCACTTTCCGGGTACTGCCAC
ACCCTGTGCCCCATCCCCAGATCTGGAAAGCTGATGGCACCAGAGAGAACACAGCCTGGG
CCTTTCCATACTTTGAAAGGCCAGACCAGGGGTGTTTAGGGTCAAGGCACCCTGTAGAGC
CTCTTAGTGGGGTACCAGCAACAGAGGCACAGACACACCAGGTCTGGGGTGGGGGGTGCG
GAGTGAAGCAGGATGCGGCTGTACTCAGGGACAGCTGGAAGCAGAAGGGGAAGCAGGACC
AGGCTTCCTCCTGGATTCCTACCAAACCCACCCCTCTCTGCCTCCGAGGGCAGGTGACAG
TAGGGTCCCAAGAGGGACGTTCACTCCCACCTTCATCCAGAATTCAACGTGGATGTTTGG
CGTTTTCCAAGGAAGTTGTTGTGTGTCCAAAAAAATGGTGCCTTGTGGCGTTAAAGATCC
AGCATTGCCACTGCAGAGGCTCAGGTTGCAGCTGTGGTGCAGGTTCAGTCCTGGGCCCAG
GAACTTCCACATGCCACAAGTATG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-110, - strand, RNAz p=0.961004
               

               
               151-410, - strand, RNAz p=0.99966
               

               
               562-705, - strand, RNAz p=0.967133

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, - strand, RNAz p=0.961004
               

               
               151-410, - strand, RNAz p=0.99966
               

               
               562-705, - strand, RNAz p=0.967133

Predicted microRNA(s): 4 entry(ies)

More info

Predicted microRNA(s): 4 entry(ies)

Help | Less info


               
               213-357, - strand, RNAmicro p=0.999988
               

               
               272-371, + strand, RNAmicro p=0.999936
               

               
               37-145, + strand, RNAmicro p=0.99978
               

               
               594-743, - strand, RNAmicro p=0.988352

Predicted microRNA(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               213-357, - strand, RNAmicro p=0.999988
               

               
               272-371, + strand, RNAmicro p=0.999936
               

               
               37-145, + strand, RNAmicro p=0.99978
               

               
               594-743, - strand, RNAmicro p=0.988352

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-756, gnl|bosTau2|chr7 (7689767-7690514)
               

               
               1-756, gnl|Hg17|chr19 (14084328-14083407)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr7 (7689767-7690514)
               

               
               1-756, gnl|Hg17|chr19 (14084328-14083407)

	1-110, - strand, RNAz p=0.961004
	151-410, - strand, RNAz p=0.99966
	562-705, - strand, RNAz p=0.967133

	213-357, - strand, RNAmicro p=0.999988
	272-371, + strand, RNAmicro p=0.999936
	37-145, + strand, RNAmicro p=0.99978
	594-743, - strand, RNAmicro p=0.988352

	1-756, gnl\|bosTau2\|chr7 (7689767-7690514)
	1-756, gnl\|Hg17\|chr19 (14084328-14083407)