Non-Coding RNA Search

Ss1.1-Pig4-TMW8054O03.5

Sequence:


               
               GTGTCTCCTCAGGCGCAGCCACAAGCGCCCGCTCCCGCCAGTGATTCTGTGGCTGCCCCA
GCATCACTGCTGGGCATGAGGAGAGGGCTGAACTCAAGACTGGAAGCAACTGCAGCCTCC
TCAGTGAAAACACGAATGCAAAAGCTGGCTGAGCAACGGCGCCACTGGGATAGCGATGAT
GTGACAGATGATGTACCTGAAAGCTCACACGTTTCGGCATTGCCATCAGAGGAAAAGGCT
GCCTCCCCTCCCAAACCATCCCTTTCTGCTGCCTCAGCAACTCCAGTTGGGAGAAGGGGC
CGTCTGGCTGACCTTGCTGCAACTATTTGCTCCTGGGAAGATGATGTAAAAAACTCATCT
GCAAAGCAAAACAGTGTACAAGAACAGCCTGGTACCACTTGTTTATCCAAATTTTCCTCT
GCAAGTGGAGCATCTGCTGGGATCAATAGCAGCAGTGTTAAGCAGGAAGCTACATGCTGT
TCCCAAAGGGATGGTGATGCCTCTTTGAATAAAGCCTCATCCTCAAGTGCTGTGGGTGCG
TCTTTGATTAATGGTGCAATTTCCAGCACAGTGAAAGCTACTTCTTCCCCAGTGAAATCT
TCTACTACATCTGTCATCGGTGCTAAAAATTGTGAGGTACAAAATCCTGAACTACTTCAA
AAAACCCCTGTTAGTCCTCTGAAAACAGAGGCATCAAAACCAATTGAGAAGTCAACTGTG
TCCCGGACAGTTCGACCCAAGGAAGAATTAAATAGAGAAGTCTGTCTGCAGTCTCAATCT
AAGGACAAGGCTACAACACCAGGAGGAACAGGAATTAAGCCTTTCCTGGAACGCTTTGGG
GAGCGTTGTCAAGAGCATAGCAAAGAAAGCCCAGCTCGTAGCACACCCCATAGAACCCCC
GTTATTACTCCAAATACAAAGGCCATACAAGAAAGGCTATTCAAGCAAAACGCATCTTCA
TCTACTACCCATTTAGCACAACAGCTCAAGCAGGAGCGTCAGAAAGAACTAGCATGTCTT
CGTGGCCGATTTGACAAGGGCAATTTATGGAGTGCAGAAAAAGGCGAAAACTCAAGAAGC
AAACAACTAGAAACCAAACAGGAAATCCCCTGCCAGAATACTCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTCTCCTCAGGCGCAGCCACAAGCGCCCGCTCCCGCCAGTGATTCTGTGGCTGCCCCA
GCATCACTGCTGGGCATGAGGAGAGGGCTGAACTCAAGACTGGAAGCAACTGCAGCCTCC
TCAGTGAAAACACGAATGCAAAAGCTGGCTGAGCAACGGCGCCACTGGGATAGCGATGAT
GTGACAGATGATGTACCTGAAAGCTCACACGTTTCGGCATTGCCATCAGAGGAAAAGGCT
GCCTCCCCTCCCAAACCATCCCTTTCTGCTGCCTCAGCAACTCCAGTTGGGAGAAGGGGC
CGTCTGGCTGACCTTGCTGCAACTATTTGCTCCTGGGAAGATGATGTAAAAAACTCATCT
GCAAAGCAAAACAGTGTACAAGAACAGCCTGGTACCACTTGTTTATCCAAATTTTCCTCT
GCAAGTGGAGCATCTGCTGGGATCAATAGCAGCAGTGTTAAGCAGGAAGCTACATGCTGT
TCCCAAAGGGATGGTGATGCCTCTTTGAATAAAGCCTCATCCTCAAGTGCTGTGGGTGCG
TCTTTGATTAATGGTGCAATTTCCAGCACAGTGAAAGCTACTTCTTCCCCAGTGAAATCT
TCTACTACATCTGTCATCGGTGCTAAAAATTGTGAGGTACAAAATCCTGAACTACTTCAA
AAAACCCCTGTTAGTCCTCTGAAAACAGAGGCATCAAAACCAATTGAGAAGTCAACTGTG
TCCCGGACAGTTCGACCCAAGGAAGAATTAAATAGAGAAGTCTGTCTGCAGTCTCAATCT
AAGGACAAGGCTACAACACCAGGAGGAACAGGAATTAAGCCTTTCCTGGAACGCTTTGGG
GAGCGTTGTCAAGAGCATAGCAAAGAAAGCCCAGCTCGTAGCACACCCCATAGAACCCCC
GTTATTACTCCAAATACAAAGGCCATACAAGAAAGGCTATTCAAGCAAAACGCATCTTCA
TCTACTACCCATTTAGCACAACAGCTCAAGCAGGAGCGTCAGAAAGAACTAGCATGTCTT
CGTGGCCGATTTGACAAGGGCAATTTATGGAGTGCAGAAAAAGGCGAAAACTCAAGAAGC
AAACAACTAGAAACCAAACAGGAAATCCCCTGCCAGAATACTCCCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17386003|gb|AAL38538.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17386003|gb|AAL38538.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               384-503, + strand, RNAz p=0.715181

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-503, + strand, RNAz p=0.715181

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC070066, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC070066, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               185-567, gnl|bosTau2|chr4 (29061937-29062319)
               

               
               185-567, gnl|Hg17|chr7 (36219027-36219409)
               

               
               185-567, gnl|Mm7|chr9 (22255338-22254956)
               


               
               573-803, gnl|bosTau2|chr4 (29063457-29063687)
               

               
               573-803, gnl|Hg17|chr7 (36220582-36220806)
               

               
               573-803, gnl|Mm7|chr9 (22253954-22253739)
               


               
               992-1105, gnl|bosTau2|chr4 (29066200-29066313)
               

               
               992-1105, gnl|canFam2|chr14 (50784720-50784813)
               

               
               992-1105, gnl|dasNov1|scaffold_177168 (4110-4202)
               

               
               992-1105, gnl|echTel1|scaffold_170084 (6832-6925)
               

               
               992-1105, gnl|galGal2|chr2 (45843425-45843336)
               

               
               992-1105, gnl|hg17|chr7 (36223882-36223975)
               

               
               992-1105, gnl|Hg17|chr7 (36223906-36224019)
               

               
               992-1105, gnl|loxAfr1|scaffold_136803 (8821-8728)
               

               
               992-1105, gnl|mm7|chr9 (22251107-22251011)
               

               
               992-1105, gnl|Mm7|chr9 (22251078-22250965)
               

               
               992-1105, gnl|oryCun1|scaffold_203336 (7050-7141)
               

               
               992-1105, gnl|panTro1|chr6 (37390323-37390416)
               

               
               992-1105, gnl|rheMac2|chr3 (89818668-89818575)
               

               
               992-1105, gnl|rn3|chr8 (21704306-21704212)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-567, gnl|bosTau2|chr4 (29061937-29062319)
               

               
               185-567, gnl|Hg17|chr7 (36219027-36219409)
               

               
               185-567, gnl|Mm7|chr9 (22255338-22254956)
               


               
               573-803, gnl|bosTau2|chr4 (29063457-29063687)
               

               
               573-803, gnl|Hg17|chr7 (36220582-36220806)
               

               
               573-803, gnl|Mm7|chr9 (22253954-22253739)
               


               
               992-1105, gnl|bosTau2|chr4 (29066200-29066313)
               

               
               992-1105, gnl|canFam2|chr14 (50784720-50784813)
               

               
               992-1105, gnl|dasNov1|scaffold_177168 (4110-4202)
               

               
               992-1105, gnl|echTel1|scaffold_170084 (6832-6925)
               

               
               992-1105, gnl|galGal2|chr2 (45843425-45843336)
               

               
               992-1105, gnl|hg17|chr7 (36223882-36223975)
               

               
               992-1105, gnl|Hg17|chr7 (36223906-36224019)
               

               
               992-1105, gnl|loxAfr1|scaffold_136803 (8821-8728)
               

               
               992-1105, gnl|mm7|chr9 (22251107-22251011)
               

               
               992-1105, gnl|Mm7|chr9 (22251078-22250965)
               

               
               992-1105, gnl|oryCun1|scaffold_203336 (7050-7141)
               

               
               992-1105, gnl|panTro1|chr6 (37390323-37390416)
               

               
               992-1105, gnl|rheMac2|chr3 (89818668-89818575)
               

               
               992-1105, gnl|rn3|chr8 (21704306-21704212)

	185-567, gnl\|bosTau2\|chr4 (29061937-29062319)
	185-567, gnl\|Hg17\|chr7 (36219027-36219409)
	185-567, gnl\|Mm7\|chr9 (22255338-22254956)

	573-803, gnl\|bosTau2\|chr4 (29063457-29063687)
	573-803, gnl\|Hg17\|chr7 (36220582-36220806)
	573-803, gnl\|Mm7\|chr9 (22253954-22253739)

	992-1105, gnl\|bosTau2\|chr4 (29066200-29066313)
	992-1105, gnl\|canFam2\|chr14 (50784720-50784813)
	992-1105, gnl\|dasNov1\|scaffold_177168 (4110-4202)
	992-1105, gnl\|echTel1\|scaffold_170084 (6832-6925)
	992-1105, gnl\|galGal2\|chr2 (45843425-45843336)
	992-1105, gnl\|hg17\|chr7 (36223882-36223975)
	992-1105, gnl\|Hg17\|chr7 (36223906-36224019)
	992-1105, gnl\|loxAfr1\|scaffold_136803 (8821-8728)
	992-1105, gnl\|mm7\|chr9 (22251107-22251011)
	992-1105, gnl\|Mm7\|chr9 (22251078-22250965)
	992-1105, gnl\|oryCun1\|scaffold_203336 (7050-7141)
	992-1105, gnl\|panTro1\|chr6 (37390323-37390416)
	992-1105, gnl\|rheMac2\|chr3 (89818668-89818575)
	992-1105, gnl\|rn3\|chr8 (21704306-21704212)