Non-Coding RNA Search

Ss1.1-Pig4-TMW8054O06.3

Sequence:


               
               GAACTTGTCTTAATAGTTTTGAGATCCAGTGATAGAAATGAATCTCTT------------
------------------------------------------------------------
------------------------AAGAATTTCTGCGGGTGCAGCTTAAAAAAAAAAATT
TGTTCTCTTGTATTGAGACCAGTATAAAACCGTAGGAGAGTCAAATGATGGGAACAGAAA
ATGAGGGGTGGAGAGCTAAATTCAGTTTCCTTTCTGAATTCACTTTAATAAATATCTGTG
TTATTTCTGAGAAGGCTAAAGGAGTTGTAGATGTTGATACACCTTAGGTAAGATGAGTGA
CTTTGGAGGTAGAGTCGTGGGTTCAGGCTATAGCTCAAGTACTCACCCTGCCATCTAATC
TTCATGGGTAACCTTGAACCTTGACTATGGGCACAAGAACAACAGCCTCACAAAGACATC
CTCAGGATTTATTGACACAATGCCTGTGAAGTGCTTGGCATGGTGCCTGGCATGGTCTAA
ACATTTCATGGGTGATGGCAGTTATTGTTGTTAAAAATGTTTATGTTGAATTGTCTAATT
TCTTTAGCTGTAAATGAGAACTAGCAGAGGAGAGATCTTTAATTTTGGAACTCCTTGGTC
ACCACATGTTGACTTTCTTTTGGTCTTTAGTAGGTTGTTGATAATAATCACTATTGATTT
ACTGCTTTGGGGCCTGGGGCTTGTATTTTTACAATGGCTCAGGGAGTTTCCACCGACTCA
GAATGATCCATAGTGAAAGCTGTGGATACCAAATTCAGGGCTGTCTGAGCATCATTGGAG
CCTTCTGACTGCCTTTGACCCTTTGACAATATCACTGATTTTTCTGATTTATAATATCCA
CATGATTCAGCAAAGTGTGTGGAATCCCACTGATTCCACTTATTGGCCCCTGTGTTACTT
TTTCTGTCTTGTATAACCTCAGGTGTCACCTCCAACAGTTGTTTCCTATTCATCTCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTTGTCTTAATAGTTTTGAGATCCAGTGATAGAAATGAATCTCTT------------
------------------------------------------------------------
------------------------AAGAATTTCTGCGGGTGCAGCTTAAAAAAAAAAATT
TGTTCTCTTGTATTGAGACCAGTATAAAACCGTAGGAGAGTCAAATGATGGGAACAGAAA
ATGAGGGGTGGAGAGCTAAATTCAGTTTCCTTTCTGAATTCACTTTAATAAATATCTGTG
TTATTTCTGAGAAGGCTAAAGGAGTTGTAGATGTTGATACACCTTAGGTAAGATGAGTGA
CTTTGGAGGTAGAGTCGTGGGTTCAGGCTATAGCTCAAGTACTCACCCTGCCATCTAATC
TTCATGGGTAACCTTGAACCTTGACTATGGGCACAAGAACAACAGCCTCACAAAGACATC
CTCAGGATTTATTGACACAATGCCTGTGAAGTGCTTGGCATGGTGCCTGGCATGGTCTAA
ACATTTCATGGGTGATGGCAGTTATTGTTGTTAAAAATGTTTATGTTGAATTGTCTAATT
TCTTTAGCTGTAAATGAGAACTAGCAGAGGAGAGATCTTTAATTTTGGAACTCCTTGGTC
ACCACATGTTGACTTTCTTTTGGTCTTTAGTAGGTTGTTGATAATAATCACTATTGATTT
ACTGCTTTGGGGCCTGGGGCTTGTATTTTTACAATGGCTCAGGGAGTTTCCACCGACTCA
GAATGATCCATAGTGAAAGCTGTGGATACCAAATTCAGGGCTGTCTGAGCATCATTGGAG
CCTTCTGACTGCCTTTGACCCTTTGACAATATCACTGATTTTTCTGATTTATAATATCCA
CATGATTCAGCAAAGTGTGTGGAATCCCACTGATTCCACTTATTGGCCCCTGTGTTACTT
TTTCTGTCTTGTATAACCTCAGGTGTCACCTCCAACAGTTGTTTCCTATTCATCTCCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               747-848, - strand, RNAz p=0.983789

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               747-848, - strand, RNAz p=0.983789

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               92-848, gnl|bosTau2|chr22 (26753183-26752432)
               

               
               92-848, gnl|Hg17|chr3 (65696899-65696177)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-848, gnl|bosTau2|chr22 (26753183-26752432)
               

               
               92-848, gnl|Hg17|chr3 (65696899-65696177)

	92-848, gnl\|bosTau2\|chr22 (26753183-26752432)
	92-848, gnl\|Hg17\|chr3 (65696899-65696177)