Ss1.1-Pig4-TMW8055G22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACTTTCTGTATAGACTGTGTGTCTTCCTCCAGGATGACCACAAGCTCTACAAGGAAG TCCCTGTAAACAGTACATTTCTCAGAAGGACCATCAGCTTGTCCTTTCCTGAACCTCAGA CATGGTTCCACAGGCTTTAAAGTGGTTCTTTACATTTCAGAAGTTCTACTTAATGGAGGG AGGGGAGAAAGAGATAGAAAGACAATGCCTCTTTTTCTCCTCTTCCTTAAATTCAAAGAC TTGGTGCTTTGGAATATCAATCACTTCTCCGTCTGGCTCCTGGAATCATTCACTTATTCA AGGCCCCTGTGCCCTTTGTGCCCCTAACCAACCGCTTTCCTTCTGGTTTTCCCTGATTTG GGGAATGTAAGATTCGCCACTAACCGTGACATTGAGGCCATTGTATAGACCTGATACAGA CAAAGACAGGAATTCAGATTAGGTCCAGCACCTCCTTGTGAGGGAGCATAAAGTGGCTGT TTGTGGAAGTCTCTTTCGGAGACCAAATAGAATGTTATGTCACTGGAATTAGGGGAGGGT TTATAAACTGAAAGGAATGCATACCTATGTTTCTTGGGACGTGAAGCATTCAGATCCTGA GTGGATGCTGTCATAATGCCAAACATCAAGCAAAACTAGCAAAATGGTGTTTTGCTAAAT TGGTCCCTCAATCTACATTTCCTAGGTTTTGTTTAGTTGTGCCTTGTGGTTCAGTGCTTC GTAAGGAAGCTGAAGATGAGCTGAACTTCTTCTTCAGTGGGAAAAACTAAAACTATCTAC AAACATGGAATATGTTTTGGGTGCAGTGTGGAAGCATAGAGAACGAGATGGTGCTGTTGA GAGGGATCTGTTCCTTTTCTGGATCTTTAGAAAGACAGAATAACCCATAATTTCGTTCTT CTGCAAGAAGCACGGGCCACACTCAGCAAGAAGAATCAGGATCAACAACATTTCTCTAAA GAGATGATAAAATATACCCCTATAGTATAACTGCTTATATGTGTGAGGCCAGACTTTCTT CAGGTACTTCAACCAAAATAACATTTCACAATACACAATGCAGAAGCAGATATTAGAATC CAATTGTTTTCTATTAAGTGGGACATTAAAGATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACTTTCTGTATAGACTGTGTGTCTTCCTCCAGGATGACCACAAGCTCTACAAGGAAG TCCCTGTAAACAGTACATTTCTCAGAAGGACCATCAGCTTGTCCTTTCCTGAACCTCAGA CATGGTTCCACAGGCTTTAAAGTGGTTCTTTACATTTCAGAAGTTCTACTTAATGGAGGG AGGGGAGAAAGAGATAGAAAGACAATGCCTCTTTTTCTCCTCTTCCTTAAATTCAAAGAC TTGGTGCTTTGGAATATCAATCACTTCTCCGTCTGGCTCCTGGAATCATTCACTTATTCA AGGCCCCTGTGCCCTTTGTGCCCCTAACCAACCGCTTTCCTTCTGGTTTTCCCTGATTTG GGGAATGTAAGATTCGCCACTAACCGTGACATTGAGGCCATTGTATAGACCTGATACAGA CAAAGACAGGAATTCAGATTAGGTCCAGCACCTCCTTGTGAGGGAGCATAAAGTGGCTGT TTGTGGAAGTCTCTTTCGGAGACCAAATAGAATGTTATGTCACTGGAATTAGGGGAGGGT TTATAAACTGAAAGGAATGCATACCTATGTTTCTTGGGACGTGAAGCATTCAGATCCTGA GTGGATGCTGTCATAATGCCAAACATCAAGCAAAACTAGCAAAATGGTGTTTTGCTAAAT TGGTCCCTCAATCTACATTTCCTAGGTTTTGTTTAGTTGTGCCTTGTGGTTCAGTGCTTC GTAAGGAAGCTGAAGATGAGCTGAACTTCTTCTTCAGTGGGAAAAACTAAAACTATCTAC AAACATGGAATATGTTTTGGGTGCAGTGTGGAAGCATAGAGAACGAGATGGTGCTGTTGA GAGGGATCTGTTCCTTTTCTGGATCTTTAGAAAGACAGAATAACCCATAATTTCGTTCTT CTGCAAGAAGCACGGGCCACACTCAGCAAGAAGAATCAGGATCAACAACATTTCTCTAAA GAGATGATAAAATATACCCCTATAGTATAACTGCTTATATGTGTGAGGCCAGACTTTCTT CAGGTACTTCAACCAAAATAACATTTCACAATACACAATGCAGAAGCAGATATTAGAATC CAATTGTTTTCTATTAAGTGGGACATTAAAGATATT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-272, + strand, RNAz p=0.808906 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-272, + strand, RNAz p=0.808906 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-635, gnl|bosTau2|chr20 (26771054-26771668) | |
| 1-635, gnl|Hg17|chr5 (32825214-32825859) | |
| 1-635, gnl|Mm7|chr15 (11902192-11901542) | |
| 678-872, gnl|bosTau2|chr20 (26771678-26771869) | |
| 678-872, gnl|canFam2|chr4 (77993271-77992868) | |
| 678-872, gnl|dasNov1|scaffold_23343 (14601-15008) | |
| 678-872, gnl|echTel1|scaffold_290516 (9455-9052) | |
| 678-872, gnl|hg17|chr5 (32825761-32826150) | |
| 678-872, gnl|Hg17|chr5 (32825869-32826080) | |
| 678-872, gnl|loxAfr1|scaffold_89288 (5113-5523) | |
| 678-872, gnl|mm7|chr15 (11901642-11901258) | |
| 678-872, gnl|Mm7|chr15 (11901532-11901346) | |
| 678-872, gnl|monDom2|scaffold_20 (39592099-39592501) | |
| 678-872, gnl|oryCun1|scaffold_201692 (51712-52107) | |
| 678-872, gnl|panTro1|chr4 (98150784-98151196) | |
| 678-872, gnl|rheMac2|chr6 (32907651-32908063) | |
| 678-872, gnl|rn3|chr2 (61203127-61202729) | |
| 959-1116, gnl|bosTau2|chr16 (28448863-28448705) | |
| 959-1116, gnl|hg17|chr1 (168972111-168972529) | |
| 959-1116, gnl|Hg17|chr1 (168972402-168972247) | |
| 959-1116, gnl|Mm7|chr1 (162081945-162082104) | |
| 959-1116, gnl|oryCun1|scaffold_87734 (1439-1000) | |
| 959-1116, gnl|panTro1|chr1 (151301425-151301854) | |
| 959-1116, gnl|rheMac2|chr1 (201966155-201966585) | |
| 959-1116, gnl|rn3|chr13 (77822578-77822142) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-635, gnl|bosTau2|chr20 (26771054-26771668) | |
| 1-635, gnl|Hg17|chr5 (32825214-32825859) | |
| 1-635, gnl|Mm7|chr15 (11902192-11901542) | |
| 678-872, gnl|bosTau2|chr20 (26771678-26771869) | |
| 678-872, gnl|canFam2|chr4 (77993271-77992868) | |
| 678-872, gnl|dasNov1|scaffold_23343 (14601-15008) | |
| 678-872, gnl|echTel1|scaffold_290516 (9455-9052) | |
| 678-872, gnl|hg17|chr5 (32825761-32826150) | |
| 678-872, gnl|Hg17|chr5 (32825869-32826080) | |
| 678-872, gnl|loxAfr1|scaffold_89288 (5113-5523) | |
| 678-872, gnl|mm7|chr15 (11901642-11901258) | |
| 678-872, gnl|Mm7|chr15 (11901532-11901346) | |
| 678-872, gnl|monDom2|scaffold_20 (39592099-39592501) | |
| 678-872, gnl|oryCun1|scaffold_201692 (51712-52107) | |
| 678-872, gnl|panTro1|chr4 (98150784-98151196) | |
| 678-872, gnl|rheMac2|chr6 (32907651-32908063) | |
| 678-872, gnl|rn3|chr2 (61203127-61202729) | |
| 959-1116, gnl|bosTau2|chr16 (28448863-28448705) | |
| 959-1116, gnl|hg17|chr1 (168972111-168972529) | |
| 959-1116, gnl|Hg17|chr1 (168972402-168972247) | |
| 959-1116, gnl|Mm7|chr1 (162081945-162082104) | |
| 959-1116, gnl|oryCun1|scaffold_87734 (1439-1000) | |
| 959-1116, gnl|panTro1|chr1 (151301425-151301854) | |
| 959-1116, gnl|rheMac2|chr1 (201966155-201966585) | |
| 959-1116, gnl|rn3|chr13 (77822578-77822142) |