Non-Coding RNA Search

Ss1.1-Pig4-TMW8055J15.5

Sequence:


               
               CTCTAGACTCTAGCGGCCGCGCCTCGAGATGATCTTCTACTCAGGGTAAAATAAAAAAAA
AATTCCCCTTCCACCAAAAAGCCTGAAATGTTGCAATAAGTTATCTCATTTGGAATGTTT
CATTAAGTTGTGTTATAGGAAAAAAAATTTTTTTTTGATGATTTGTGTATAGAATTATAT
CCATCTGTCTGCCTTTGGCTCCCAGTTATTGCCTCTTAAAATAAAACATAAAATACAATC
CACACTAAAATGGAAAGTTTCTCTCAACTGGCTGTGTTAATGTAGTCAGGAGTGCTCACC
ATGTGTACTGAGCTCAGAAACTAGGCATGGCCTCTGCCTCCCAAGGGCCCCCTCCCTGCC
TCAAGTGAGGAAAAGTGTTCTCACAGGCCTGCCCTTCTGAGTCAGTGATGTCGGGCAGAA
AGCAGCCGTAATTTCGCCTTCCTTTCCTTCTCTCTAAGGTAAAGAGATCTGCATTTGTCA
CTCTCCTGTCCTCTGAGCCATTACTCAGGGCCAGCCAAGACAGTATCTAGCATAGATCAT
TTTCCTGGGAGCCAGAGGCCCTGCCTTTAACAGGATTTCAGGGACAGATTCAGACAAGAG
GGCGATGGTGGTAAATGTCACTGCCATGAGGAGCTGCTTAACTATAAGCCGGTGGTGTCT
CAGGAGTCTAGTGGGGAGAAACAGTTTCTTTTTGACCCTCTGCCTTCCCTTGTCCGAAAG
GCTGGTGGGTTCTTGTGACCACTGACCTCAGCAGAAGTTGATAAGGCAGGAGGAAACTTC
TGTTACCACAGTGGGTCCGTCTTCCTGGAAAACCAGCTGCTGGGTGTGGGTTGTCCTGGG
CTGTCTGTGGGCCTTGTACCCATAGGATGCTTGGCAGTAGGACCCTGGCTGTTTTCTCTA
CACCTTGTGAGAGAGAGGGCAGCATGGAGGGGGTCCCAGATGACCTCCCCACGTGCCCAT
TCTAGGCTGACCTGAGAGGTGGGTCCCTGGGAGCTGAGGTAGAAAAACAGGAGCCCAGGG
AAGGCCATTGGAAGCACCCATGGTTTAAATACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAGACTCTAGCGGCCGCGCCTCGAGATGATCTTCTACTCAGGGTAAAATAAAAAAAA
AATTCCCCTTCCACCAAAAAGCCTGAAATGTTGCAATAAGTTATCTCATTTGGAATGTTT
CATTAAGTTGTGTTATAGGAAAAAAAATTTTTTTTTGATGATTTGTGTATAGAATTATAT
CCATCTGTCTGCCTTTGGCTCCCAGTTATTGCCTCTTAAAATAAAACATAAAATACAATC
CACACTAAAATGGAAAGTTTCTCTCAACTGGCTGTGTTAATGTAGTCAGGAGTGCTCACC
ATGTGTACTGAGCTCAGAAACTAGGCATGGCCTCTGCCTCCCAAGGGCCCCCTCCCTGCC
TCAAGTGAGGAAAAGTGTTCTCACAGGCCTGCCCTTCTGAGTCAGTGATGTCGGGCAGAA
AGCAGCCGTAATTTCGCCTTCCTTTCCTTCTCTCTAAGGTAAAGAGATCTGCATTTGTCA
CTCTCCTGTCCTCTGAGCCATTACTCAGGGCCAGCCAAGACAGTATCTAGCATAGATCAT
TTTCCTGGGAGCCAGAGGCCCTGCCTTTAACAGGATTTCAGGGACAGATTCAGACAAGAG
GGCGATGGTGGTAAATGTCACTGCCATGAGGAGCTGCTTAACTATAAGCCGGTGGTGTCT
CAGGAGTCTAGTGGGGAGAAACAGTTTCTTTTTGACCCTCTGCCTTCCCTTGTCCGAAAG
GCTGGTGGGTTCTTGTGACCACTGACCTCAGCAGAAGTTGATAAGGCAGGAGGAAACTTC
TGTTACCACAGTGGGTCCGTCTTCCTGGAAAACCAGCTGCTGGGTGTGGGTTGTCCTGGG
CTGTCTGTGGGCCTTGTACCCATAGGATGCTTGGCAGTAGGACCCTGGCTGTTTTCTCTA
CACCTTGTGAGAGAGAGGGCAGCATGGAGGGGGTCCCAGATGACCTCCCCACGTGCCCAT
TCTAGGCTGACCTGAGAGGTGGGTCCCTGGGAGCTGAGGTAGAAAAACAGGAGCCCAGGG
AAGGCCATTGGAAGCACCCATGGTTTAAATACTGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-437, - strand, RNAz p=0.995019

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-437, - strand, RNAz p=0.995019

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-1056, gnl|bosTau2|chr3 (75285763-75286808)
               

               
               28-1056, gnl|Hg17|chr1 (37948747-37947378)
               

               
               28-1056, gnl|Mm7|chr4 (124290316-124291224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-1056, gnl|bosTau2|chr3 (75285763-75286808)
               

               
               28-1056, gnl|Hg17|chr1 (37948747-37947378)
               

               
               28-1056, gnl|Mm7|chr4 (124290316-124291224)

	28-1056, gnl\|bosTau2\|chr3 (75285763-75286808)
	28-1056, gnl\|Hg17\|chr1 (37948747-37947378)
	28-1056, gnl\|Mm7\|chr4 (124290316-124291224)