Non-Coding RNA Search

Ss1.1-Pig4-TMW8055M06.3

Sequence:


               
               GTCCAAACTTTAACAAAACAAAAAGTCTGTTTAGGGGCTGCCTTTGCATCATCACCAGGC
CTTGGAGGGGAGTAGGGGGTAGGCCAACTGGACTACAAAAAACTGTAGAAAGGGAGGGAT
CTTGAAATAGGCGGAAAGGTATAGAAAGCGAGAACGATCGCCGCCTGGCCTGCCTTGCCA
GTTGAAGTGAGAAGCGCTTGAGGTCTCAAGAGGCTCCACGCGTGTGTAAGGGGCCATCTG
TTATTATCAAGAGTGTCGTTATTGAGATAATGTCACTTCCCGGCTGGCCCCAGGTCCCGC
CAGTGCGGAAAGAGAAACCCCGGGGGAGGTGGAGGCCAGCGGAGATTTCTCCAGCCATCC
GCAGCAGGCAGGAAGGGCGACCGTACACAGCCACTTCCGGGTCCTGCGACCTAAGCGGTG
GTATCACGGAGACGCCGCTCCTGAGGCCTCACCAGTCGAAAAGTTTTTTTCCGGAGCTCT
CACCGAGAGCCGCGCCAGCGGGACAGGTTCCAGTCTGCGGCAGACACGCCCCACTCTGGG
CATCGTGACGTCAGAGGAGCACAGTGAGCGCATTTCCGCCCTCTCCCTCCGCCCAACACG
AGGGGGCGGGGCCAAGAGGAGGGCGCTCTGCTTGTGCGTCACTTCCGGTAAGTCTATCGG
CGACAACGGCAACATGGCTCTGAACGGCGCTGGTGAGAACTTGGGCTGCGGGGGCCGGTG
GTTGCGGGGTACGGGAAGCAGTCTGCTTCAGCAAAACCCTCAACCCTTCATGCCTCTCTT
CCCCCAGAAGTCGACGATTTCTCCTGGGAGCCCCCGACTGAAGCGGAGACGAAGGTGCTG
CAAGCGCGGCGGGAGCGGCAGGATCGCATCTCCCGGCTCATGGGCGACTACCTGCTGCGT
GGTTACCGCATGCTGGGCGAGACGTGCGCGGACTGCGGGGTGAGGAGAGACTCGGGACGT
GGGAACCAGGATGGGGCCGTGGGCTAGGCCGCACGGCCCTTCCTCAAGTCTCCACTCTGG
ACCGCATCGCCTAGCGTCTCACCCCTGCCCCGTATGCTTTCTGGCTCCTAGACGATCCTC
CTCCAAGACAAACAGCGGAAAATCTACTGCGTGGCTTGTCAGGAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAAACTTTAACAAAACAAAAAGTCTGTTTAGGGGCTGCCTTTGCATCATCACCAGGC
CTTGGAGGGGAGTAGGGGGTAGGCCAACTGGACTACAAAAAACTGTAGAAAGGGAGGGAT
CTTGAAATAGGCGGAAAGGTATAGAAAGCGAGAACGATCGCCGCCTGGCCTGCCTTGCCA
GTTGAAGTGAGAAGCGCTTGAGGTCTCAAGAGGCTCCACGCGTGTGTAAGGGGCCATCTG
TTATTATCAAGAGTGTCGTTATTGAGATAATGTCACTTCCCGGCTGGCCCCAGGTCCCGC
CAGTGCGGAAAGAGAAACCCCGGGGGAGGTGGAGGCCAGCGGAGATTTCTCCAGCCATCC
GCAGCAGGCAGGAAGGGCGACCGTACACAGCCACTTCCGGGTCCTGCGACCTAAGCGGTG
GTATCACGGAGACGCCGCTCCTGAGGCCTCACCAGTCGAAAAGTTTTTTTCCGGAGCTCT
CACCGAGAGCCGCGCCAGCGGGACAGGTTCCAGTCTGCGGCAGACACGCCCCACTCTGGG
CATCGTGACGTCAGAGGAGCACAGTGAGCGCATTTCCGCCCTCTCCCTCCGCCCAACACG
AGGGGGCGGGGCCAAGAGGAGGGCGCTCTGCTTGTGCGTCACTTCCGGTAAGTCTATCGG
CGACAACGGCAACATGGCTCTGAACGGCGCTGGTGAGAACTTGGGCTGCGGGGGCCGGTG
GTTGCGGGGTACGGGAAGCAGTCTGCTTCAGCAAAACCCTCAACCCTTCATGCCTCTCTT
CCCCCAGAAGTCGACGATTTCTCCTGGGAGCCCCCGACTGAAGCGGAGACGAAGGTGCTG
CAAGCGCGGCGGGAGCGGCAGGATCGCATCTCCCGGCTCATGGGCGACTACCTGCTGCGT
GGTTACCGCATGCTGGGCGAGACGTGCGCGGACTGCGGGGTGAGGAGAGACTCGGGACGT
GGGAACCAGGATGGGGCCGTGGGCTAGGCCGCACGGCCCTTCCTCAAGTCTCCACTCTGG
ACCGCATCGCCTAGCGTCTCACCCCTGCCCCGTATGCTTTCTGGCTCCTAGACGATCCTC
CTCCAAGACAAACAGCGGAAAATCTACTGCGTGGCTTGTCAGGAGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883425|ref|XP_588807.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883425|ref|XP_588807.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               930-1045, - strand, RNAz p=0.993154

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               930-1045, - strand, RNAz p=0.993154

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-1128, gnl|bosTau2|chr29 (37880973-37879988)
               

               
               150-1128, gnl|Hg17|chr11 (65094011-65094989)
               

               
               150-1128, gnl|Mm7|chr19 (5626877-5626075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-1128, gnl|bosTau2|chr29 (37880973-37879988)
               

               
               150-1128, gnl|Hg17|chr11 (65094011-65094989)
               

               
               150-1128, gnl|Mm7|chr19 (5626877-5626075)

	150-1128, gnl\|bosTau2\|chr29 (37880973-37879988)
	150-1128, gnl\|Hg17\|chr11 (65094011-65094989)
	150-1128, gnl\|Mm7\|chr19 (5626877-5626075)