Ss1.1-Pig4-TMW8055N13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGAGTAACTCATTCTCTGAGGCTTTGGCCGCAGAGCATCAAGGGGATCTCAGTCGAG AGCAAGGGGAGACTTTGAAATGGGACAGGGATTCACATGGAGATGTGAAAGAGAGAAACA TAAGTAAACACCAGACCTCGAAAGAGTACCTTGCTGCCTTCCTTGCAGCCTGCCAGGTCT TCCTGGAGTGCTCAAGTTTCCCAGTTTACATCGCTGACGGGAGCCATACCTCAGAATTAC ATTCTGAAAAATCAGAGACTGACTGGGAGCACGTGCAGCCTCCACTGTGGCTCCAGACAC TGATGAATGCTTGCAGCCACGCAGGTGATTTCAGTGTGCAGAGTGTTGCTATTTCTCTTG TCATGGACCTGGTAGGATTGACTCAGTCTGTGGCCATGGTCACTGGGGAAAACATCAACA GCGTGGAGCCTGCACAGCCCTTAAGTCCAAACCAGGGACGAGTGGCTGTGGTCATTAGAC CTCCCCTCACTCCAGGCAATCTGAGATACATAGCTGAGAAGACTGAGTTTTTCAAGCATG TAGCTTTAACATTATGGGACCAGCTGGGAGATGCGACACCTCAGCACCACCAGAAGAGTG TGGAACTGTTTTATCAATTACATAACTTGGTTCCTTCTTCTAGCATCTGTGAGGATGTTA TAAGTCAGCAGTTAACCCATAAAGATAAGAAAATAAGGATGGAAGCGCATGCGAAGTTTG CAGTTCTTTGGCATCTGACAAGGGACCTCCATATAAATAAGTCTTCATCTTTTGCACGGT CTTTTGACAGGTCACTGTTCATCATGTTAGACAGCCTTAACAGTCTCGATGGTTCTACCA GCTCTGTGGGACAAGCCTGGCTGAACCAAGTCCTACAAAGACATGATATCGCAAGAGTTT TGGAACCATTGCTATTGCTCTTGCTTCATCCCAAAACTCAGAGGGTTTCAGTGCAGCGTG TACAAGCAGAACGCTATTGGAATAAGGCTCCCTGTTATCCTGGAGAAGAGAATGACAAGC GTTTCATGCAAAATTTTTCCTGCAGTGATGCCAAGTACAACTCATTGCATCTAAAGGAAA TGGTGAAAAGACACTGACCATGGACGAAATAGAGAACTTTAGTCTTACCGTTAATCCATT AAGTGACAGACTGTCCCTTCTGAGTACCAGCAGTGAGACAATTCCAATGGTTGTATCTGA TTTTGATCTTCCAGACCAACAGATAGAAATACTTCAGAGCTCCGACTCAGGATGTTCCCA GTCCTCTGCTGGGGACAACTTGAGTTACGAGGTTGATCCTGAAAACGTAAATGCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGAGTAACTCATTCTCTGAGGCTTTGGCCGCAGAGCATCAAGGGGATCTCAGTCGAG AGCAAGGGGAGACTTTGAAATGGGACAGGGATTCACATGGAGATGTGAAAGAGAGAAACA TAAGTAAACACCAGACCTCGAAAGAGTACCTTGCTGCCTTCCTTGCAGCCTGCCAGGTCT TCCTGGAGTGCTCAAGTTTCCCAGTTTACATCGCTGACGGGAGCCATACCTCAGAATTAC ATTCTGAAAAATCAGAGACTGACTGGGAGCACGTGCAGCCTCCACTGTGGCTCCAGACAC TGATGAATGCTTGCAGCCACGCAGGTGATTTCAGTGTGCAGAGTGTTGCTATTTCTCTTG TCATGGACCTGGTAGGATTGACTCAGTCTGTGGCCATGGTCACTGGGGAAAACATCAACA GCGTGGAGCCTGCACAGCCCTTAAGTCCAAACCAGGGACGAGTGGCTGTGGTCATTAGAC CTCCCCTCACTCCAGGCAATCTGAGATACATAGCTGAGAAGACTGAGTTTTTCAAGCATG TAGCTTTAACATTATGGGACCAGCTGGGAGATGCGACACCTCAGCACCACCAGAAGAGTG TGGAACTGTTTTATCAATTACATAACTTGGTTCCTTCTTCTAGCATCTGTGAGGATGTTA TAAGTCAGCAGTTAACCCATAAAGATAAGAAAATAAGGATGGAAGCGCATGCGAAGTTTG CAGTTCTTTGGCATCTGACAAGGGACCTCCATATAAATAAGTCTTCATCTTTTGCACGGT CTTTTGACAGGTCACTGTTCATCATGTTAGACAGCCTTAACAGTCTCGATGGTTCTACCA GCTCTGTGGGACAAGCCTGGCTGAACCAAGTCCTACAAAGACATGATATCGCAAGAGTTT TGGAACCATTGCTATTGCTCTTGCTTCATCCCAAAACTCAGAGGGTTTCAGTGCAGCGTG TACAAGCAGAACGCTATTGGAATAAGGCTCCCTGTTATCCTGGAGAAGAGAATGACAAGC GTTTCATGCAAAATTTTTCCTGCAGTGATGCCAAGTACAACTCATTGCATCTAAAGGAAA TGGTGAAAAGACACTGACCATGGACGAAATAGAGAACTTTAGTCTTACCGTTAATCCATT AAGTGACAGACTGTCCCTTCTGAGTACCAGCAGTGAGACAATTCCAATGGTTGTATCTGA TTTTGATCTTCCAGACCAACAGATAGAAATACTTCAGAGCTCCGACTCAGGATGTTCCCA GTCCTCTGCTGGGGACAACTTGAGTTACGAGGTTGATCCTGAAAACGTAAATGCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 300-419, + strand, RNAz p=0.747624 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 300-419, + strand, RNAz p=0.747624 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX648667, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 261-536, gnl|bosTau2|chr9 (10034515-10034790) | |
| 261-536, gnl|canFam2|chr12 (46549565-46549849) | |
| 261-536, gnl|danRer3|chr16 (44202382-44202104) | |
| 261-536, gnl|dasNov1|scaffold_80553 (4418-4702) | |
| 261-536, gnl|echTel1|scaffold_204316 (11349-11633) | |
| 261-536, gnl|fr1|chrUn (112646022-112646314) | |
| 261-536, gnl|galGal2|chr3 (76302910-76302626) | |
| 261-536, gnl|hg17|chr6 (83896557-83896841) | |
| 261-536, gnl|Hg17|chr6 (83896560-83896835) | |
| 261-536, gnl|loxAfr1|scaffold_2725 (129228-128944) | |
| 261-536, gnl|mm7|chr9 (86617176-86617460) | |
| 261-536, gnl|Mm7|chr9 (86617179-86617454) | |
| 261-536, gnl|monDom2|scaffold_0 (147029054-147028770) | |
| 261-536, gnl|oryCun1|scaffold_82636 (1643-1359) | |
| 261-536, gnl|panTro1|chr5 (85532259-85532543) | |
| 261-536, gnl|rheMac2|chr4 (79159232-79159516) | |
| 261-536, gnl|rn3|chr8 (91787452-91787736) | |
| 261-536, gnl|tetNig1|chr8 (1674133-1673840) | |
| 261-536, gnl|xenTro1|scaffold_73 (2447526-2447808) | |
| 789-1050, gnl|bosTau2|chr9 (10039753-10040014) | |
| 789-1050, gnl|canFam2|chr12 (46554877-46555066) | |
| 789-1050, gnl|danRer3|chr16 (44201583-44201394) | |
| 789-1050, gnl|dasNov1|scaffold_80553 (8516-8705) | |
| 789-1050, gnl|echTel1|scaffold_1830 (1783-1972) | |
| 789-1050, gnl|fr1|chrUn (112646942-112647131) | |
| 789-1050, gnl|galGal2|chr3 (76297331-76297142) | |
| 789-1050, gnl|hg17|chr6 (83902052-83902241) | |
| 789-1050, gnl|Hg17|chr6 (83902055-83902316) | |
| 789-1050, gnl|loxAfr1|scaffold_16627 (13718-13529) | |
| 789-1050, gnl|mm7|chr9 (86621504-86621693) | |
| 789-1050, gnl|Mm7|chr9 (86621507-86621768) | |
| 789-1050, gnl|monDom2|scaffold_0 (147016915-147016725) | |
| 789-1050, gnl|oryCun1|scaffold_145461 (8885-8696) | |
| 789-1050, gnl|panTro1|chr5 (85537751-85537940) | |
| 789-1050, gnl|rheMac2|chr4 (79164710-79164899) | |
| 789-1050, gnl|rn3|chr8 (91792565-91792754) | |
| 789-1050, gnl|tetNig1|chr8 (1673329-1673140) | |
| 789-1050, gnl|xenTro1|scaffold_73 (2448848-2449037) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 261-536, gnl|bosTau2|chr9 (10034515-10034790) | |
| 261-536, gnl|canFam2|chr12 (46549565-46549849) | |
| 261-536, gnl|danRer3|chr16 (44202382-44202104) | |
| 261-536, gnl|dasNov1|scaffold_80553 (4418-4702) | |
| 261-536, gnl|echTel1|scaffold_204316 (11349-11633) | |
| 261-536, gnl|fr1|chrUn (112646022-112646314) | |
| 261-536, gnl|galGal2|chr3 (76302910-76302626) | |
| 261-536, gnl|hg17|chr6 (83896557-83896841) | |
| 261-536, gnl|Hg17|chr6 (83896560-83896835) | |
| 261-536, gnl|loxAfr1|scaffold_2725 (129228-128944) | |
| 261-536, gnl|mm7|chr9 (86617176-86617460) | |
| 261-536, gnl|Mm7|chr9 (86617179-86617454) | |
| 261-536, gnl|monDom2|scaffold_0 (147029054-147028770) | |
| 261-536, gnl|oryCun1|scaffold_82636 (1643-1359) | |
| 261-536, gnl|panTro1|chr5 (85532259-85532543) | |
| 261-536, gnl|rheMac2|chr4 (79159232-79159516) | |
| 261-536, gnl|rn3|chr8 (91787452-91787736) | |
| 261-536, gnl|tetNig1|chr8 (1674133-1673840) | |
| 261-536, gnl|xenTro1|scaffold_73 (2447526-2447808) | |
| 789-1050, gnl|bosTau2|chr9 (10039753-10040014) | |
| 789-1050, gnl|canFam2|chr12 (46554877-46555066) | |
| 789-1050, gnl|danRer3|chr16 (44201583-44201394) | |
| 789-1050, gnl|dasNov1|scaffold_80553 (8516-8705) | |
| 789-1050, gnl|echTel1|scaffold_1830 (1783-1972) | |
| 789-1050, gnl|fr1|chrUn (112646942-112647131) | |
| 789-1050, gnl|galGal2|chr3 (76297331-76297142) | |
| 789-1050, gnl|hg17|chr6 (83902052-83902241) | |
| 789-1050, gnl|Hg17|chr6 (83902055-83902316) | |
| 789-1050, gnl|loxAfr1|scaffold_16627 (13718-13529) | |
| 789-1050, gnl|mm7|chr9 (86621504-86621693) | |
| 789-1050, gnl|Mm7|chr9 (86621507-86621768) | |
| 789-1050, gnl|monDom2|scaffold_0 (147016915-147016725) | |
| 789-1050, gnl|oryCun1|scaffold_145461 (8885-8696) | |
| 789-1050, gnl|panTro1|chr5 (85537751-85537940) | |
| 789-1050, gnl|rheMac2|chr4 (79164710-79164899) | |
| 789-1050, gnl|rn3|chr8 (91792565-91792754) | |
| 789-1050, gnl|tetNig1|chr8 (1673329-1673140) | |
| 789-1050, gnl|xenTro1|scaffold_73 (2448848-2449037) |