Ss1.1-Pig4-TMW8055O03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTTCCCCCCTCGCAGCCTCGGTCCTTCCCCGCTGCCGGCAAGTCAGCTTTGCTCCGAG TCACGTGTCAGTGCCTGAGGCAGAGACTGAGAGAAAAAAACGCGCTTCATTCCTTCTTCC ACCGCCATACTGTATTTTATCCTAAATCTCATTTTTATTCCAACATTTTACTCCCGCTCG TGGAAGGTTTTTCTGGAAAAAAAAAAAAATGAAGTGCGGTTTGGTTTCCTTGTCAACGGA GGATGAAGTGAACAGCTGAGCAGCTCGCAGAGAGCAGAGTTAAAACAAGACGAGCCAACC ATGACTGGCAAAACGCAGACCAGCAATGTCACCAATAAGAATGACCCCAAGTCCATCAAC TCTCGAGTTTTCATTGGAAATCTAAATACAGCCATTGTCAAGAAAGTTGACATTGAAGCC ATTTTCTCAAAATATGGAAAAATAGTTGGCTGCTCAGTTCACAAAGGTTACGCATTTGTA CAGTACATGAGTGAGCGACACGCAAGAGCTGCAGTGGCTGGAGAAAATGCCAGGATCATC GCTGGACAACCACTGGATCACCACTAGAAATTATGAAGAACAAGACATCAAAGTATTAAG TGAAATATACTGAGTTTTGAGACCGCTCAGATGCTGAGGATGATGTCCAAATATGTATAT ATATCATCAGTGGTATCACTAAAAGCTTTTTAAAACAAAAAAATTAAGAATTGCAGCATG TCTGGTTGATGTTTTCTCTAATAAATACATCACCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTTCCCCCCTCGCAGCCTCGGTCCTTCCCCGCTGCCGGCAAGTCAGCTTTGCTCCGAG TCACGTGTCAGTGCCTGAGGCAGAGACTGAGAGAAAAAAACGCGCTTCATTCCTTCTTCC ACCGCCATACTGTATTTTATCCTAAATCTCATTTTTATTCCAACATTTTACTCCCGCTCG TGGAAGGTTTTTCTGGAAAAAAAAAAAAATGAAGTGCGGTTTGGTTTCCTTGTCAACGGA GGATGAAGTGAACAGCTGAGCAGCTCGCAGAGAGCAGAGTTAAAACAAGACGAGCCAACC ATGACTGGCAAAACGCAGACCAGCAATGTCACCAATAAGAATGACCCCAAGTCCATCAAC TCTCGAGTTTTCATTGGAAATCTAAATACAGCCATTGTCAAGAAAGTTGACATTGAAGCC ATTTTCTCAAAATATGGAAAAATAGTTGGCTGCTCAGTTCACAAAGGTTACGCATTTGTA CAGTACATGAGTGAGCGACACGCAAGAGCTGCAGTGGCTGGAGAAAATGCCAGGATCATC GCTGGACAACCACTGGATCACCACTAGAAATTATGAAGAACAAGACATCAAAGTATTAAG TGAAATATACTGAGTTTTGAGACCGCTCAGATGCTGAGGATGATGTCCAAATATGTATAT ATATCATCAGTGGTATCACTAAAAGCTTTTTAAAACAAAAAAATTAAGAATTGCAGCATG TCTGGTTGATGTTTTCTCTAATAAATACATCACCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 414-533, + strand, RNAz p=0.757879 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 414-533, + strand, RNAz p=0.757879 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 6-180, gnl|bosTau2|chr14 (49393912-49393740) | |
| 6-180, gnl|Hg17|chr8 (85258195-85258368) | |
| 6-180, gnl|Mm7|chr3 (13479041-13479209) | |
| 294-563, gnl|bosTau2|chr13 (47919754-47919486) | |
| 294-563, gnl|Hg17|chr20 (32123536-32123804) | |
| 294-563, gnl|Mm7|chr2 (154598130-154598397) | |
| 320-548, gnl|bosTau2|chr10 (15787511-15787283) | |
| 320-548, gnl|canFam2|chr15 (21276506-21276353) | |
| 320-548, gnl|danRer3|chrNA (184516518-184516665) | |
| 320-548, gnl|dasNov1|scaffold_61675 (9556-9709) | |
| 320-548, gnl|echTel1|scaffold_298830 (47438-47591) | |
| 320-548, gnl|fr1|chrUn (82532868-82532718) | |
| 320-548, gnl|Hg17|chr14 (20772188-20771960) | |
| 320-548, gnl|hg17|chr15 (77315722-77315872) | |
| 320-548, gnl|loxAfr1|scaffold_14168 (4188-4035) | |
| 320-548, gnl|Mm7|chr14 (47418031-47417803) | |
| 320-548, gnl|mm7|chr4 (96914948-96914795) | |
| 320-548, gnl|monDom2|scaffold_53 (5958305-5958152) | |
| 320-548, gnl|oryCun1|scaffold_67401 (2500-2347) | |
| 320-548, gnl|panTro1|chr16 (78029369-78029522) | |
| 320-548, gnl|rheMac2|chr7 (58365406-58365559) | |
| 320-548, gnl|rn3|chr15 (27543130-27542977) | |
| 320-548, gnl|tetNig1|chrUn_random (22011138-22011282) | |
| 320-548, gnl|xenTro1|scaffold_207 (1696909-1696756) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-180, gnl|bosTau2|chr14 (49393912-49393740) | |
| 6-180, gnl|Hg17|chr8 (85258195-85258368) | |
| 6-180, gnl|Mm7|chr3 (13479041-13479209) | |
| 294-563, gnl|bosTau2|chr13 (47919754-47919486) | |
| 294-563, gnl|Hg17|chr20 (32123536-32123804) | |
| 294-563, gnl|Mm7|chr2 (154598130-154598397) | |
| 320-548, gnl|bosTau2|chr10 (15787511-15787283) | |
| 320-548, gnl|canFam2|chr15 (21276506-21276353) | |
| 320-548, gnl|danRer3|chrNA (184516518-184516665) | |
| 320-548, gnl|dasNov1|scaffold_61675 (9556-9709) | |
| 320-548, gnl|echTel1|scaffold_298830 (47438-47591) | |
| 320-548, gnl|fr1|chrUn (82532868-82532718) | |
| 320-548, gnl|Hg17|chr14 (20772188-20771960) | |
| 320-548, gnl|hg17|chr15 (77315722-77315872) | |
| 320-548, gnl|loxAfr1|scaffold_14168 (4188-4035) | |
| 320-548, gnl|Mm7|chr14 (47418031-47417803) | |
| 320-548, gnl|mm7|chr4 (96914948-96914795) | |
| 320-548, gnl|monDom2|scaffold_53 (5958305-5958152) | |
| 320-548, gnl|oryCun1|scaffold_67401 (2500-2347) | |
| 320-548, gnl|panTro1|chr16 (78029369-78029522) | |
| 320-548, gnl|rheMac2|chr7 (58365406-58365559) | |
| 320-548, gnl|rn3|chr15 (27543130-27542977) | |
| 320-548, gnl|tetNig1|chrUn_random (22011138-22011282) | |
| 320-548, gnl|xenTro1|scaffold_207 (1696909-1696756) |