Non-Coding RNA Search

Ss1.1-Pig4-TMW8055O04.3

Sequence:


               
               TCTGATGGCACACGGCAGGACACCGCCCAAGTGGTGGTGAATGTCACTGACGCCAATACG
CATCGTCCCGTGTTTCAGAGCTCCCACTACACGGTGAATGTTAACGAGGACCGGCCAGCA
GGCACCACAGTGGTGCTGATCAGTGCCACAGACGAGGACACCGGTGAGAACGCCCGCATC
ACCTACTTTATGGAGGACAGCATCCCCCAGTTCCGCATCGATGCAGACACGGGGGCTGTC
ACCACCCAAGCCGAGCTGGACTACGAGGACCAGGTGTCCTACACCCTGGCCATCACCGCC
CGGGACAACGGTATCCCCCAGAAGTCTGACACCACCTACCTGGAGATCCTGGTGAACGAC
GTGAATGACAACGCTCCTCAGTTCCTGCGGGACTCCTACCAGGGCAGCGTCTACGAGGAT
GTGCCCCCCTTCACCAGCGTCCTGCAGATCTCAGCCACTGACCGTGACTCTGGTCTTAAC
GGCAGGGTCTTCTACACCTTCCAAGGTGGCGATGATGGAGATGGAGACTTTATCGTAGAG
TCCACATCAGGCATCGTGCGCACGCTGCGGAGGCTGGATCGTGAAAATGTGGCCCAGTAC
ATCCTGCGGGCGTATGCAGTGGACAAGGGGATGCCTCCAGCCCGCACGCCCATGGAGGTG
ACGGTCACTGTGTTGGATGTGAATGACAATCCGCCCGTCTTTGAGCAGGATGAGTTTGAT
GTGTTTGTGGAAGAGAACAGTCCCATTGGGCTGGCTGTGGCCCGGGTCACAGCCACTGAC
CCTGACGAGGGCACCAACGCCCAGATCATGTACCAGATTGTGGAGGGCAACATCCCTGAG
GTCTTCCAGCTGGACATCTTCTCTGGGGAGCTGACCGCCCTGGTAGACTTGGACTACGAG
GACCGGCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGATGGCACACGGCAGGACACCGCCCAAGTGGTGGTGAATGTCACTGACGCCAATACG
CATCGTCCCGTGTTTCAGAGCTCCCACTACACGGTGAATGTTAACGAGGACCGGCCAGCA
GGCACCACAGTGGTGCTGATCAGTGCCACAGACGAGGACACCGGTGAGAACGCCCGCATC
ACCTACTTTATGGAGGACAGCATCCCCCAGTTCCGCATCGATGCAGACACGGGGGCTGTC
ACCACCCAAGCCGAGCTGGACTACGAGGACCAGGTGTCCTACACCCTGGCCATCACCGCC
CGGGACAACGGTATCCCCCAGAAGTCTGACACCACCTACCTGGAGATCCTGGTGAACGAC
GTGAATGACAACGCTCCTCAGTTCCTGCGGGACTCCTACCAGGGCAGCGTCTACGAGGAT
GTGCCCCCCTTCACCAGCGTCCTGCAGATCTCAGCCACTGACCGTGACTCTGGTCTTAAC
GGCAGGGTCTTCTACACCTTCCAAGGTGGCGATGATGGAGATGGAGACTTTATCGTAGAG
TCCACATCAGGCATCGTGCGCACGCTGCGGAGGCTGGATCGTGAAAATGTGGCCCAGTAC
ATCCTGCGGGCGTATGCAGTGGACAAGGGGATGCCTCCAGCCCGCACGCCCATGGAGGTG
ACGGTCACTGTGTTGGATGTGAATGACAATCCGCCCGTCTTTGAGCAGGATGAGTTTGAT
GTGTTTGTGGAAGAGAACAGTCCCATTGGGCTGGCTGTGGCCCGGGTCACAGCCACTGAC
CCTGACGAGGGCACCAACGCCCAGATCATGTACCAGATTGTGGAGGGCAACATCCCTGAG
GTCTTCCAGCTGGACATCTTCTCTGGGGAGCTGACCGCCCTGGTAGACTTGGACTACGAG
GACCGGCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               44-162, - strand, RNAz p=0.785226

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-162, - strand, RNAz p=0.785226

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               44-910, gnl|bosTau2|chr22 (39379596-39378731)
               

               
               44-910, gnl|Hg17|chr3 (48672529-48671664)
               

               
               44-910, gnl|Mm7|chr9 (108539037-108539902)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-910, gnl|bosTau2|chr22 (39379596-39378731)
               

               
               44-910, gnl|Hg17|chr3 (48672529-48671664)
               

               
               44-910, gnl|Mm7|chr9 (108539037-108539902)

	44-910, gnl\|bosTau2\|chr22 (39379596-39378731)
	44-910, gnl\|Hg17\|chr3 (48672529-48671664)
	44-910, gnl\|Mm7\|chr9 (108539037-108539902)