Non-Coding RNA Search

Ss1.1-Pig4-TMW8055O13.3

Sequence:


               
               GGAATTCTTCTGGTGAGTGGTTTCCGATCTTGGATCGGTCAGGACCTGCGACCACATCTC
GCATGTGTTTGGAATCCAGAGGCTATGATCTAAACTGAGCTCTGAGCTCAGGCTGAATCA
TCCTAGCTTTGCTATAAACATGAGAACCCTGCTGCCAGCTCAGCTTTTGAGGTATTTTGA
ATTACAGCCTTGTGTCTTAGCTAGGATATTTGTCCTTTTACTTTTTCATCATGCTGGGGA
TAAAGGAGTCGAAAAATGGAAAGCAGTGTATTGATTCCATGTTGGTTACTCTACTACAAA
GGAAGTACATGTTGGGGTCTGTATTCAAGGGCAGAAAGTATTATACAGTGACATTGCTTC
AGGTTAATTAAAAATAATAGCAACTGAGAACTTTGGAAAAAGCTGAGACCTCATTTTGCA
GTATTCTTGTCTTTAGCACCCAAGTAAAACTTGACACACTTGGGCCACTTGGAAGAAATG
CTCTCTGAATTTGCAAAATAATTGTTCTAAGTGAATTATAGCATCATCTAAACTATGTAT
AGCAACGTTTACCTTGCAGCTTACTTAAAATTCTTGAGGAAATTCTGTTTCTATTCGTGG
AGGAGAGTACATCTGTACCCTGGGGAGAATTGGGGGGAATTACCCCCAAATATCTTCCCG
TAAACTCAGATTTGCTTTGAAGTTCCTTTTTATCCTAAGAAATTTACATGGATGTTACAT
TGTTCTCCATGATGTGTCTGTGTTTTCCCTCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTCTTCTGGTGAGTGGTTTCCGATCTTGGATCGGTCAGGACCTGCGACCACATCTC
GCATGTGTTTGGAATCCAGAGGCTATGATCTAAACTGAGCTCTGAGCTCAGGCTGAATCA
TCCTAGCTTTGCTATAAACATGAGAACCCTGCTGCCAGCTCAGCTTTTGAGGTATTTTGA
ATTACAGCCTTGTGTCTTAGCTAGGATATTTGTCCTTTTACTTTTTCATCATGCTGGGGA
TAAAGGAGTCGAAAAATGGAAAGCAGTGTATTGATTCCATGTTGGTTACTCTACTACAAA
GGAAGTACATGTTGGGGTCTGTATTCAAGGGCAGAAAGTATTATACAGTGACATTGCTTC
AGGTTAATTAAAAATAATAGCAACTGAGAACTTTGGAAAAAGCTGAGACCTCATTTTGCA
GTATTCTTGTCTTTAGCACCCAAGTAAAACTTGACACACTTGGGCCACTTGGAAGAAATG
CTCTCTGAATTTGCAAAATAATTGTTCTAAGTGAATTATAGCATCATCTAAACTATGTAT
AGCAACGTTTACCTTGCAGCTTACTTAAAATTCTTGAGGAAATTCTGTTTCTATTCGTGG
AGGAGAGTACATCTGTACCCTGGGGAGAATTGGGGGGAATTACCCCCAAATATCTTCCCG
TAAACTCAGATTTGCTTTGAAGTTCCTTTTTATCCTAAGAAATTTACATGGATGTTACAT
TGTTCTCCATGATGTGTCTGTGTTTTCCCTCCCCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               371-526, - strand, RNAz p=0.98585
               

               
               567-684, + strand, RNAz p=0.577656

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-526, - strand, RNAz p=0.98585
               

               
               567-684, + strand, RNAz p=0.577656

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-746, gnl|bosTau2|chr9 (32859345-32860094)
               

               
               1-746, gnl|Hg17|chr6 (90961027-90960267)
               

               
               1-746, gnl|Mm7|chr4 (32606192-32606842)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-746, gnl|bosTau2|chr9 (32859345-32860094)
               

               
               1-746, gnl|Hg17|chr6 (90961027-90960267)
               

               
               1-746, gnl|Mm7|chr4 (32606192-32606842)

	371-526, - strand, RNAz p=0.98585
	567-684, + strand, RNAz p=0.577656

	1-746, gnl\|bosTau2\|chr9 (32859345-32860094)
	1-746, gnl\|Hg17\|chr6 (90961027-90960267)
	1-746, gnl\|Mm7\|chr4 (32606192-32606842)