Non-Coding RNA Search

Ss1.1-Pig4-TMW8056B19.5

Sequence:


               
               CCTGCGCACCCTGGGCTGGACACATATACAACTACCCCTAACCAGGCCTGACAGAGTTTG
TTCTGGAGGCAGAGACACCTGGCAAGGGAACTGCAGATGCAAAAGCCAGGAGGCCCGGCT
TGAAGGGCCCGGCTCACCTCGCCCAGTGTCTGCAGGCTCTTCACGGCACCCACCACAGCC
TGGTGTTCTAAACCCAGCTGGGCTGCCACCTCTGCGCTGTCCAGGCCGCCATCAGCCGCC
TCCAGCCGCCGCAGCAACACCTCCGGCACCGGACCGTCGGCCATGGCTGCTCCCAGTGCG
CACGGCGTGTCCCTGCCGGCGGCCAGGGCAACCGGAAGCGGAACCGGCGTCCAGAGCGTT
CGTCGCCATCTTGTGTGTGGCGGATCATGTCGTCGGGTCGGTACACCGCCATCTTGGGTG
TGTCACTTGAACTCCAGAGCGAGTTAGGAGCCCAGACCTAGCTGGACTAGTGGCGTCTGG
TTGACCAGAAGGGTCAAATCGATGCTGTCAACCACAGACTCACAGCATTGGGGGCGGGGT
CAGCGTTGGCCACGATTGTGGCAAGCAGAAGTTCCTGGACCAGGGCTGGAACTTGCACCA
CAACAAGTGACCAGAGCCACAGTAGTGACAATGTTGGATCCTTAACTGCTAGGCCACCAG
GGAGCTCCTCACAGTGTTGTTTTAAGCTTCTTCCAGCCCCATCTTCAGCAAGCTCCGTGA
CTTTGACCTTTCCCCTCTCTGGGCCTCAGAGCACTGTGCCCTTGGGGGATTCTTTTATAA
CCCACAAGAGGGCTGTGGGTGGTGGGCTGGCTCCAGACACAATCATCCTGCTGATGTCAA
CTACTTTGAAATGTTCAAAGGGAGGCTGGATAGGGACCAACCCTATTTATAGAGGGAGAA
GGACTCAGTTAAGAGTCAAGGTAGCAGCTAATCTGTGTGGACAGTATCCCATACATCCAG
GCCAGTGCTAAGTGCTTCGGGTTTGCTATTTCATTTTCCCAAAAACTGTATGATATATAC
CAATATAATCTCCACTTCACAGATGTGAAAACCGAGGCTTGGACAGAGATATGCCTTGTC
TAAGGTTCTGCAAGGTGGAGATGGTGTGAGAAATTATAAACACCTCAGAGCCTGCCCTCT
CCACCCCCTCTTTGCCCCAATGCTTTGAGAAGACCTATGTCAGGGAAATAATTTGTAGCA
TAGATCAGTGCTCACCTATAGAGATATAATTTGAGATGCAAATGTAATCTTACACTTCCT
TGTAGCAATGTTAAAAACAAAAGGGGTGAAATTAATTTGAAGACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGCGCACCCTGGGCTGGACACATATACAACTACCCCTAACCAGGCCTGACAGAGTTTG
TTCTGGAGGCAGAGACACCTGGCAAGGGAACTGCAGATGCAAAAGCCAGGAGGCCCGGCT
TGAAGGGCCCGGCTCACCTCGCCCAGTGTCTGCAGGCTCTTCACGGCACCCACCACAGCC
TGGTGTTCTAAACCCAGCTGGGCTGCCACCTCTGCGCTGTCCAGGCCGCCATCAGCCGCC
TCCAGCCGCCGCAGCAACACCTCCGGCACCGGACCGTCGGCCATGGCTGCTCCCAGTGCG
CACGGCGTGTCCCTGCCGGCGGCCAGGGCAACCGGAAGCGGAACCGGCGTCCAGAGCGTT
CGTCGCCATCTTGTGTGTGGCGGATCATGTCGTCGGGTCGGTACACCGCCATCTTGGGTG
TGTCACTTGAACTCCAGAGCGAGTTAGGAGCCCAGACCTAGCTGGACTAGTGGCGTCTGG
TTGACCAGAAGGGTCAAATCGATGCTGTCAACCACAGACTCACAGCATTGGGGGCGGGGT
CAGCGTTGGCCACGATTGTGGCAAGCAGAAGTTCCTGGACCAGGGCTGGAACTTGCACCA
CAACAAGTGACCAGAGCCACAGTAGTGACAATGTTGGATCCTTAACTGCTAGGCCACCAG
GGAGCTCCTCACAGTGTTGTTTTAAGCTTCTTCCAGCCCCATCTTCAGCAAGCTCCGTGA
CTTTGACCTTTCCCCTCTCTGGGCCTCAGAGCACTGTGCCCTTGGGGGATTCTTTTATAA
CCCACAAGAGGGCTGTGGGTGGTGGGCTGGCTCCAGACACAATCATCCTGCTGATGTCAA
CTACTTTGAAATGTTCAAAGGGAGGCTGGATAGGGACCAACCCTATTTATAGAGGGAGAA
GGACTCAGTTAAGAGTCAAGGTAGCAGCTAATCTGTGTGGACAGTATCCCATACATCCAG
GCCAGTGCTAAGTGCTTCGGGTTTGCTATTTCATTTTCCCAAAAACTGTATGATATATAC
CAATATAATCTCCACTTCACAGATGTGAAAACCGAGGCTTGGACAGAGATATGCCTTGTC
TAAGGTTCTGCAAGGTGGAGATGGTGTGAGAAATTATAAACACCTCAGAGCCTGCCCTCT
CCACCCCCTCTTTGCCCCAATGCTTTGAGAAGACCTATGTCAGGGAAATAATTTGTAGCA
TAGATCAGTGCTCACCTATAGAGATATAATTTGAGATGCAAATGTAATCTTACACTTCCT
TGTAGCAATGTTAAAAACAAAAGGGGTGAAATTAATTTGAAGACTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               668-785, + strand, RNAz p=0.993357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-785, + strand, RNAz p=0.993357

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-348, gnl|bosTau2|chr7 (8621190-8621538)
               

               
               1-348, gnl|Hg17|chr19 (12905226-12905582)
               

               
               1-348, gnl|Mm7|chr8 (83443393-83443087)
               


               
               668-1208, gnl|bosTau2|chr7 (8622225-8622751)
               

               
               668-1208, gnl|Hg17|chr19 (12905762-12906247)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr7 (8621190-8621538)
               

               
               1-348, gnl|Hg17|chr19 (12905226-12905582)
               

               
               1-348, gnl|Mm7|chr8 (83443393-83443087)
               


               
               668-1208, gnl|bosTau2|chr7 (8622225-8622751)
               

               
               668-1208, gnl|Hg17|chr19 (12905762-12906247)

	1-348, gnl\|bosTau2\|chr7 (8621190-8621538)
	1-348, gnl\|Hg17\|chr19 (12905226-12905582)
	1-348, gnl\|Mm7\|chr8 (83443393-83443087)

	668-1208, gnl\|bosTau2\|chr7 (8622225-8622751)
	668-1208, gnl\|Hg17\|chr19 (12905762-12906247)