Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D02.5

Sequence:


               
               CGGCAGCGGTCTTACCTCCGACCACGTTCCCGGGGCACTGCGCCCTGTGCTGCGCCCCGG
AGACCCTGCCGAGGCTGGTACTCAGGACCTCCAAAGGAACACTTGCTGATCTCACATTAC
GATGGAATATAAAAAGTCCCCTGATGGAGGCTGGGGCTGGGTAATTGTGTTTGTCTCCTT
CTGTACTCAGTTTTTGTGCTATGGATCTCCGTTAGCTGTTGGCGTCTTATACGTAGAATG
GCTGGACGCCTTTGGTGAAGGGAAAGGAAAAACAGCCTGGGTCGGATCCCTTGCAAGTGG
AGTTGGCTTGCTTGCAAGTCTTGGATGTGGCTTATTATACACTGCAACAGTGACCATTAC
GTGCCAGTATTTCGACAGCCGCCGTGGCCTTGCACTTGGCCTGATTTCAACAGGTTCAAG
TGTTGGACTTTTTATATATGCTGCTCTGCAGAGGCTGCTGATTGATTTATATGGACTGGA
TGGATGCCTGCTGATTGTGGGTGCTTTAGCTTTAAACATACTAGCCTGTGGCAGTCTGAT
GAGACCCCTCCAGTCCTCTGATTGCCCTTTGCCTGAAAAAACAGCTCTGGAAAATATACC
AGATAGATACTCAATTTATAATGAAAAAGAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCAGCGGTCTTACCTCCGACCACGTTCCCGGGGCACTGCGCCCTGTGCTGCGCCCCGG
AGACCCTGCCGAGGCTGGTACTCAGGACCTCCAAAGGAACACTTGCTGATCTCACATTAC
GATGGAATATAAAAAGTCCCCTGATGGAGGCTGGGGCTGGGTAATTGTGTTTGTCTCCTT
CTGTACTCAGTTTTTGTGCTATGGATCTCCGTTAGCTGTTGGCGTCTTATACGTAGAATG
GCTGGACGCCTTTGGTGAAGGGAAAGGAAAAACAGCCTGGGTCGGATCCCTTGCAAGTGG
AGTTGGCTTGCTTGCAAGTCTTGGATGTGGCTTATTATACACTGCAACAGTGACCATTAC
GTGCCAGTATTTCGACAGCCGCCGTGGCCTTGCACTTGGCCTGATTTCAACAGGTTCAAG
TGTTGGACTTTTTATATATGCTGCTCTGCAGAGGCTGCTGATTGATTTATATGGACTGGA
TGGATGCCTGCTGATTGTGGGTGCTTTAGCTTTAAACATACTAGCCTGTGGCAGTCTGAT
GAGACCCCTCCAGTCCTCTGATTGCCCTTTGCCTGAAAAAACAGCTCTGGAAAATATACC
AGATAGATACTCAATTTATAATGAAAAAGAAAAGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               201-319, + strand, RNAz p=0.914639
               

               
               451-570, + strand, RNAz p=0.733835

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-319, + strand, RNAz p=0.914639
               

               
               451-570, + strand, RNAz p=0.733835

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_194298, +
               

               
               3' of AK125791, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_194298, +
               

               
               3' of AK125791, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               84-319, gnl|bosTau2|chr28 (11365959-11366195)
               

               
               84-319, gnl|Hg17|chr10 (61114093-61113858)
               

               
               84-319, gnl|Mm7|chr10 (69858169-69858405)
               


               
               412-634, gnl|bosTau2|chr28 (11409770-11409992)
               

               
               412-634, gnl|Hg17|chr10 (61084355-61084133)
               

               
               412-634, gnl|Mm7|chr10 (69884498-69884720)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-319, gnl|bosTau2|chr28 (11365959-11366195)
               

               
               84-319, gnl|Hg17|chr10 (61114093-61113858)
               

               
               84-319, gnl|Mm7|chr10 (69858169-69858405)
               


               
               412-634, gnl|bosTau2|chr28 (11409770-11409992)
               

               
               412-634, gnl|Hg17|chr10 (61084355-61084133)
               

               
               412-634, gnl|Mm7|chr10 (69884498-69884720)

	201-319, + strand, RNAz p=0.914639
	451-570, + strand, RNAz p=0.733835

	84-319, gnl\|bosTau2\|chr28 (11365959-11366195)
	84-319, gnl\|Hg17\|chr10 (61114093-61113858)
	84-319, gnl\|Mm7\|chr10 (69858169-69858405)

	412-634, gnl\|bosTau2\|chr28 (11409770-11409992)
	412-634, gnl\|Hg17\|chr10 (61084355-61084133)
	412-634, gnl\|Mm7\|chr10 (69884498-69884720)