Non-Coding RNA Search

Ss1.1-Pig4-TMW8056D17.3

Sequence:


               
               CCAGTCGCGATCTAGATAGTCTCAAAATTTTTTTTTCTTATTTCTATTATTATCCTTCCT
TAGAATTACGTTAGCAATTAAACTAGCTGAGGCACTGTGAAGACTTTTAAGATCATCTGG
TATCTATTTCTAAAAAAAAAAAATCAAAATTTTCAAAGAAAAAAGCCATTAAGAAAAGGA
TCAAACTGAAATTTCTAAACTGTTAAGGAGAGTAATTTGCTCCTCATTTAAGATAAACTA
ATCTATTATGAACCCAAAGCATGTGCAGAGTTTTACGTGGATTTGCTGGAGTCTGCTGAA
GCCTTGGAAGATTTATTTGAACCATCCTGAGTATGTAAAGTAAAGAGGTCCCCCAGCCCT
CCTGTCATCCTGAGAAAAGTCAGTGCAAAATCAGCAAGTTCATTCCTTAAGCTTTCACGG
GGTATACAATCAGGTAATTTCTCCCCAGCTGTTACATGGCATTTTTTCTTTAAATCCTCA
AAATATATTCACAATTGCATATCATTTCTTAGTCATCAACAATTATAAATGAAAAAGAGT
TGCCTGAAACATTTATATGTAGCAACATAATGTTTTAGTATATATATCCCATCTCTAGTT
TGAATCCTAAATATTCTTAGGATCTGCCATCTGTTCATTCTTTTTTAAAACTTCTTCAGT
TTCCTACTCACAAAGAGAACATGGAAATAAGGAGAAACAACACTGGAAATTAAACGCTTA
CAACTGTATACACAACCTGGCAGCATCACCACCTGGTCACTCAAGGCACAGCCTGATTCT
CCCAGTTTAAGGAAACAGGGCAGACAGGCAGGGCAGCAAGAAGGCAACGTACAGACTGAG
GCTCTTCCCAGACTCTCTCCCCGATGCTGTCTTCACTAGATCATGCTCTCTCTAAACCAC
AGAGATCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTCGCGATCTAGATAGTCTCAAAATTTTTTTTTCTTATTTCTATTATTATCCTTCCT
TAGAATTACGTTAGCAATTAAACTAGCTGAGGCACTGTGAAGACTTTTAAGATCATCTGG
TATCTATTTCTAAAAAAAAAAAATCAAAATTTTCAAAGAAAAAAGCCATTAAGAAAAGGA
TCAAACTGAAATTTCTAAACTGTTAAGGAGAGTAATTTGCTCCTCATTTAAGATAAACTA
ATCTATTATGAACCCAAAGCATGTGCAGAGTTTTACGTGGATTTGCTGGAGTCTGCTGAA
GCCTTGGAAGATTTATTTGAACCATCCTGAGTATGTAAAGTAAAGAGGTCCCCCAGCCCT
CCTGTCATCCTGAGAAAAGTCAGTGCAAAATCAGCAAGTTCATTCCTTAAGCTTTCACGG
GGTATACAATCAGGTAATTTCTCCCCAGCTGTTACATGGCATTTTTTCTTTAAATCCTCA
AAATATATTCACAATTGCATATCATTTCTTAGTCATCAACAATTATAAATGAAAAAGAGT
TGCCTGAAACATTTATATGTAGCAACATAATGTTTTAGTATATATATCCCATCTCTAGTT
TGAATCCTAAATATTCTTAGGATCTGCCATCTGTTCATTCTTTTTTAAAACTTCTTCAGT
TTCCTACTCACAAAGAGAACATGGAAATAAGGAGAAACAACACTGGAAATTAAACGCTTA
CAACTGTATACACAACCTGGCAGCATCACCACCTGGTCACTCAAGGCACAGCCTGATTCT
CCCAGTTTAAGGAAACAGGGCAGACAGGCAGGGCAGCAAGAAGGCAACGTACAGACTGAG
GCTCTTCCCAGACTCTCTCCCCGATGCTGTCTTCACTAGATCATGCTCTCTCTAAACCAC
AGAGATCTCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               13-122, - strand, RNAz p=0.851858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-122, - strand, RNAz p=0.851858

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-617, gnl|bosTau2|chr27 (9570317-9570908)
               

               
               13-617, gnl|Hg17|chr4 (186592941-186591670)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-617, gnl|bosTau2|chr27 (9570317-9570908)
               

               
               13-617, gnl|Hg17|chr4 (186592941-186591670)

	13-617, gnl\|bosTau2\|chr27 (9570317-9570908)
	13-617, gnl\|Hg17\|chr4 (186592941-186591670)