Ss1.1-Pig4-TMW8056E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATGGACAGCTGAGGCCTGACAAAAATTATAGCTTTCCCTTGAACAATTTGGTTTGCT CATATGATTCAGTGAAAGATGTTCTGGTACCAGACTATGGATTGAGTAATCTAACAGCCT GTAATTGGTGCCATGGCACATCTGTGCGAAGGGTCAGAGGAGATGGGTCTATTGTGTATT TAGATGGGGACAGAACTAATTCTAGGTCCACTGGTGGCAAGTGTGGTTGTGGATTCAAAC ATTTTTGGGATGGTAAAGAGTATGACAATCTACCAGAAGCCTTTCCTATTACTTTGGAAT GGGGTGGAAGAGTGGTCAGAGAAACAGTATATTGGTTCCAGTATGAAAGTGATGCGTCTT TGAACAGTAATGTTTATGATGTTGCGATGAAACTTGTTACCAAGCACTTTCCAGGTGAAT TTGGGAGTGAAATCCTGGTTCAGAAAGTTGTCCACACTATATTGCATCAGACTGCCAAAA AGAATCCTGATGATTATACTCCTGTAAATATAGATGGTGCTCATGCCCAAAGAGTTGGAG ATGTCCAAGGACAAGAGTCGGAGTCTCAGCTCCCAATTAAAATTATTCTCACTGGACAGA AAACGAAAACTTTGCACAAGGAGGAATTAAACATGAGTAAAACTGAAAGAACTATTCAAC AGAATATTACGGAACAGGCTTCTGTAATGCAGAAACGGAAAACAGAGAAGTTAAAACAAG AACAAAAAGGGCAGCCCAGGACTGTTTCTCCCAGTACCGTTCGGGATGGTCCATCCTCTG CACCTGCCACCCCCACCAAGGCTCCCTATTCACCAACAACTTCGAAGGAGAAGTCACAGC AGCTGCTAAAAAAGCAGTAATGGAATCTAAGGAACTACAGGAGCAAGCTGACAAAGAAAT GTACTCCTTGTGTCTTTTAGCAACGTTAATGGGAGAAGATGTATGGTCTTATGCAAAGGG GCTTCCGCACATGTTCCAGCAGGGTGGTGTATTCTACAATATTATGAAGAAAACCATGGG TATGGCTGATGGCAAGCATTGTACTTTTCCACATCTGCCTGGCAAAACCTTTGTCTATAA CGCTTCTGAAGATAGACTGGAGTTGTGTGTGGATGCTGCAGGACATTTCCCCATCGGTCC TGATGTTGAAGATTTAGTTAAAGAGGCTGTAAGTCAGGTTCGAGCAGAGGCTACTACAAG AAGTAGGGAATCCAGTCCCTCACATGGGTTATTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATGGACAGCTGAGGCCTGACAAAAATTATAGCTTTCCCTTGAACAATTTGGTTTGCT CATATGATTCAGTGAAAGATGTTCTGGTACCAGACTATGGATTGAGTAATCTAACAGCCT GTAATTGGTGCCATGGCACATCTGTGCGAAGGGTCAGAGGAGATGGGTCTATTGTGTATT TAGATGGGGACAGAACTAATTCTAGGTCCACTGGTGGCAAGTGTGGTTGTGGATTCAAAC ATTTTTGGGATGGTAAAGAGTATGACAATCTACCAGAAGCCTTTCCTATTACTTTGGAAT GGGGTGGAAGAGTGGTCAGAGAAACAGTATATTGGTTCCAGTATGAAAGTGATGCGTCTT TGAACAGTAATGTTTATGATGTTGCGATGAAACTTGTTACCAAGCACTTTCCAGGTGAAT TTGGGAGTGAAATCCTGGTTCAGAAAGTTGTCCACACTATATTGCATCAGACTGCCAAAA AGAATCCTGATGATTATACTCCTGTAAATATAGATGGTGCTCATGCCCAAAGAGTTGGAG ATGTCCAAGGACAAGAGTCGGAGTCTCAGCTCCCAATTAAAATTATTCTCACTGGACAGA AAACGAAAACTTTGCACAAGGAGGAATTAAACATGAGTAAAACTGAAAGAACTATTCAAC AGAATATTACGGAACAGGCTTCTGTAATGCAGAAACGGAAAACAGAGAAGTTAAAACAAG AACAAAAAGGGCAGCCCAGGACTGTTTCTCCCAGTACCGTTCGGGATGGTCCATCCTCTG CACCTGCCACCCCCACCAAGGCTCCCTATTCACCAACAACTTCGAAGGAGAAGTCACAGC AGCTGCTAAAAAAGCAGTAATGGAATCTAAGGAACTACAGGAGCAAGCTGACAAAGAAAT GTACTCCTTGTGTCTTTTAGCAACGTTAATGGGAGAAGATGTATGGTCTTATGCAAAGGG GCTTCCGCACATGTTCCAGCAGGGTGGTGTATTCTACAATATTATGAAGAAAACCATGGG TATGGCTGATGGCAAGCATTGTACTTTTCCACATCTGCCTGGCAAAACCTTTGTCTATAA CGCTTCTGAAGATAGACTGGAGTTGTGTGTGGATGCTGCAGGACATTTCCCCATCGGTCC TGATGTTGAAGATTTAGTTAAAGAGGCTGTAAGTCAGGTTCGAGCAGAGGCTACTACAAG AAGTAGGGAATCCAGTCCCTCACATGGGTTATTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-199, - strand, RNAz p=0.578268 | |
| 520-759, - strand, RNAz p=0.958904 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-199, - strand, RNAz p=0.578268 | |
| 520-759, - strand, RNAz p=0.958904 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-832, gnl|bosTau2|chr14 (19041809-19042640) | |
| 1-832, gnl|Hg17|chr8 (67740255-67739424) | |
| 1-832, gnl|Mm7|chr1 (9889394-9888563) | |
| 1019-1236, gnl|bosTau2|chr14 (19063445-19063662) | |
| 1019-1236, gnl|canFam2|chr29 (19212193-19212715) | |
| 1019-1236, gnl|danRer3|chr2 (37016248-37015771) | |
| 1019-1236, gnl|dasNov1|scaffold_71691 (3133-3655) | |
| 1019-1236, gnl|echTel1|scaffold_309102 (3321-2796) | |
| 1019-1236, gnl|fr1|chrUn (225532789-225532300) | |
| 1019-1236, gnl|galGal2|chr2 (114663081-114663597) | |
| 1019-1236, gnl|hg17|chr8 (67709572-67710094) | |
| 1019-1236, gnl|Hg17|chr8 (67710162-67709945) | |
| 1019-1236, gnl|loxAfr1|scaffold_259 (50658-50136) | |
| 1019-1236, gnl|mm7|chr1 (9867488-9868010) | |
| 1019-1236, gnl|Mm7|chr1 (9868078-9867861) | |
| 1019-1236, gnl|monDom2|scaffold_4 (94879973-94879451) | |
| 1019-1236, gnl|oryCun1|scaffold_211013 (112035-111525) | |
| 1019-1236, gnl|panTro1|chr7 (69724418-69724940) | |
| 1019-1236, gnl|rheMac2|chr8 (69265031-69265553) | |
| 1019-1236, gnl|rn3|chr5 (9114575-9114053) | |
| 1019-1236, gnl|tetNig1|chrUn_random (84469509-84470004) | |
| 1019-1236, gnl|xenTro1|scaffold_109 (160935-161448) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-832, gnl|bosTau2|chr14 (19041809-19042640) | |
| 1-832, gnl|Hg17|chr8 (67740255-67739424) | |
| 1-832, gnl|Mm7|chr1 (9889394-9888563) | |
| 1019-1236, gnl|bosTau2|chr14 (19063445-19063662) | |
| 1019-1236, gnl|canFam2|chr29 (19212193-19212715) | |
| 1019-1236, gnl|danRer3|chr2 (37016248-37015771) | |
| 1019-1236, gnl|dasNov1|scaffold_71691 (3133-3655) | |
| 1019-1236, gnl|echTel1|scaffold_309102 (3321-2796) | |
| 1019-1236, gnl|fr1|chrUn (225532789-225532300) | |
| 1019-1236, gnl|galGal2|chr2 (114663081-114663597) | |
| 1019-1236, gnl|hg17|chr8 (67709572-67710094) | |
| 1019-1236, gnl|Hg17|chr8 (67710162-67709945) | |
| 1019-1236, gnl|loxAfr1|scaffold_259 (50658-50136) | |
| 1019-1236, gnl|mm7|chr1 (9867488-9868010) | |
| 1019-1236, gnl|Mm7|chr1 (9868078-9867861) | |
| 1019-1236, gnl|monDom2|scaffold_4 (94879973-94879451) | |
| 1019-1236, gnl|oryCun1|scaffold_211013 (112035-111525) | |
| 1019-1236, gnl|panTro1|chr7 (69724418-69724940) | |
| 1019-1236, gnl|rheMac2|chr8 (69265031-69265553) | |
| 1019-1236, gnl|rn3|chr5 (9114575-9114053) | |
| 1019-1236, gnl|tetNig1|chrUn_random (84469509-84470004) | |
| 1019-1236, gnl|xenTro1|scaffold_109 (160935-161448) |