Non-Coding RNA Search

Ss1.1-Pig4-TMW8056F09.5

Sequence:


               
               TTTCAACCGCATCAGGAGGCACTAGGACCCGGAATCCACAGAAGACTCATCACCCGTGAC
CACACTTACTTTCTTACCTGCTTAGATCCTGTGCATCGCCCCCCAACCCCGCGACCCCCC
GCCTTTACCTTGCCCTCTTTCCCGCCATCATTCAGGCAAACCTTAATTCTGATTAAGCCG
GTTTTTAGCTTGCTTTTTCCCTGCATCCGAGGAACTACCCCATGGCTGGAGAAAATAAAC
AGTGATGCTGATGAGCCCAGTTTTAAACTGCTGTACATAAATCTCAAGAACTATGTGAAA
AACAACATTTGTTTTATGAGTCATCACCAAGAGGAATTAGTGCCAAAACAGCTTCAAAAA
AGAAAACCCCAAGAACAGTTCTTGGAGTCTAAGAAGCTGCGGGGTAGGGGACAACCAAGG
CAGCTTTCTCCGGAGACCTAGCAGCTGCAAAACCTCACAGATGTTGATACAGTGTACGAA
CACTTAGAGTGTCTTCCCACCATACACAGTTGCCACTCATTCTACCCCCCAAAAGGTAGA
TGAGGTACAAGGTCCCAAGTGATCTCTTTCCTACTGAGCAGAATACCAGGTTAAAAATAT
TAGCTGGTTCACCATCTACCACCTTTTTCACAGAGGAGCCTTTGAAAGACCATGAACTAG
TGATGCCATCAACTTTTACCTTAAGGCATGTATGCACAGAGGCCAGTGGCGGCTTTGTTT
TTCAGACACAGAAGTGGTCTGATCACAGGCTTACAGTTTTTGGCCTACTGAGACACACCT
TGCACTGGGTCATGTGCAAAAAAGAACCCAAGACATAATGTGGATGACTGCACACATATT
CTAGGTTAGGACAGGGTTCTGGTTAGGATTCTAGTGATAATTTCTAACTACAAACAAGTA
TAAAGATTATATGACGTATTTTATGAATTATAAACTACAATGTAATGCAAAAGATCCTTT
TTGATGTTAGTATTATAAAATAAACAATTATGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCAACCGCATCAGGAGGCACTAGGACCCGGAATCCACAGAAGACTCATCACCCGTGAC
CACACTTACTTTCTTACCTGCTTAGATCCTGTGCATCGCCCCCCAACCCCGCGACCCCCC
GCCTTTACCTTGCCCTCTTTCCCGCCATCATTCAGGCAAACCTTAATTCTGATTAAGCCG
GTTTTTAGCTTGCTTTTTCCCTGCATCCGAGGAACTACCCCATGGCTGGAGAAAATAAAC
AGTGATGCTGATGAGCCCAGTTTTAAACTGCTGTACATAAATCTCAAGAACTATGTGAAA
AACAACATTTGTTTTATGAGTCATCACCAAGAGGAATTAGTGCCAAAACAGCTTCAAAAA
AGAAAACCCCAAGAACAGTTCTTGGAGTCTAAGAAGCTGCGGGGTAGGGGACAACCAAGG
CAGCTTTCTCCGGAGACCTAGCAGCTGCAAAACCTCACAGATGTTGATACAGTGTACGAA
CACTTAGAGTGTCTTCCCACCATACACAGTTGCCACTCATTCTACCCCCCAAAAGGTAGA
TGAGGTACAAGGTCCCAAGTGATCTCTTTCCTACTGAGCAGAATACCAGGTTAAAAATAT
TAGCTGGTTCACCATCTACCACCTTTTTCACAGAGGAGCCTTTGAAAGACCATGAACTAG
TGATGCCATCAACTTTTACCTTAAGGCATGTATGCACAGAGGCCAGTGGCGGCTTTGTTT
TTCAGACACAGAAGTGGTCTGATCACAGGCTTACAGTTTTTGGCCTACTGAGACACACCT
TGCACTGGGTCATGTGCAAAAAAGAACCCAAGACATAATGTGGATGACTGCACACATATT
CTAGGTTAGGACAGGGTTCTGGTTAGGATTCTAGTGATAATTTCTAACTACAAACAAGTA
TAAAGATTATATGACGTATTTTATGAATTATAAACTACAATGTAATGCAAAAGATCCTTT
TTGATGTTAGTATTATAAAATAAACAATTATGCCGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               715-869, - strand, RNAz p=0.741512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-869, - strand, RNAz p=0.741512

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               284-502, gnl|bosTau2|chr9 (40661310-40661526)
               

               
               284-502, gnl|canFam2|chr1 (29979487-29979949)
               

               
               284-502, gnl|dasNov1|scaffold_1782 (36859-37330)
               

               
               284-502, gnl|echTel1|scaffold_322735 (90480-90915)
               

               
               284-502, gnl|hg17|chr6 (134353776-134354243)
               

               
               284-502, gnl|Hg17|chr6 (134354143-134353924)
               

               
               284-502, gnl|loxAfr1|scaffold_52437 (11257-11716)
               

               
               284-502, gnl|mm7|chr10 (22459099-22458680)
               

               
               284-502, gnl|Mm7|chr10 (22458785-22458992)
               

               
               284-502, gnl|monDom2|scaffold_0 (77008394-77007922)
               

               
               284-502, gnl|panTro1|chr5 (136995378-136995845)
               

               
               284-502, gnl|rheMac2|chr4 (129867264-129866786)
               

               
               284-502, gnl|rn3|chr1 (23326255-23326692)
               


               
               532-975, gnl|bosTau2|chr9 (40661638-40662091)
               

               
               532-975, gnl|Hg17|chr6 (134353808-134353350)
               

               
               532-975, gnl|Mm7|chr10 (22459071-22459458)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               284-502, gnl|bosTau2|chr9 (40661310-40661526)
               

               
               284-502, gnl|canFam2|chr1 (29979487-29979949)
               

               
               284-502, gnl|dasNov1|scaffold_1782 (36859-37330)
               

               
               284-502, gnl|echTel1|scaffold_322735 (90480-90915)
               

               
               284-502, gnl|hg17|chr6 (134353776-134354243)
               

               
               284-502, gnl|Hg17|chr6 (134354143-134353924)
               

               
               284-502, gnl|loxAfr1|scaffold_52437 (11257-11716)
               

               
               284-502, gnl|mm7|chr10 (22459099-22458680)
               

               
               284-502, gnl|Mm7|chr10 (22458785-22458992)
               

               
               284-502, gnl|monDom2|scaffold_0 (77008394-77007922)
               

               
               284-502, gnl|panTro1|chr5 (136995378-136995845)
               

               
               284-502, gnl|rheMac2|chr4 (129867264-129866786)
               

               
               284-502, gnl|rn3|chr1 (23326255-23326692)
               


               
               532-975, gnl|bosTau2|chr9 (40661638-40662091)
               

               
               532-975, gnl|Hg17|chr6 (134353808-134353350)
               

               
               532-975, gnl|Mm7|chr10 (22459071-22459458)

	284-502, gnl\|bosTau2\|chr9 (40661310-40661526)
	284-502, gnl\|canFam2\|chr1 (29979487-29979949)
	284-502, gnl\|dasNov1\|scaffold_1782 (36859-37330)
	284-502, gnl\|echTel1\|scaffold_322735 (90480-90915)
	284-502, gnl\|hg17\|chr6 (134353776-134354243)
	284-502, gnl\|Hg17\|chr6 (134354143-134353924)
	284-502, gnl\|loxAfr1\|scaffold_52437 (11257-11716)
	284-502, gnl\|mm7\|chr10 (22459099-22458680)
	284-502, gnl\|Mm7\|chr10 (22458785-22458992)
	284-502, gnl\|monDom2\|scaffold_0 (77008394-77007922)
	284-502, gnl\|panTro1\|chr5 (136995378-136995845)
	284-502, gnl\|rheMac2\|chr4 (129867264-129866786)
	284-502, gnl\|rn3\|chr1 (23326255-23326692)

	532-975, gnl\|bosTau2\|chr9 (40661638-40662091)
	532-975, gnl\|Hg17\|chr6 (134353808-134353350)
	532-975, gnl\|Mm7\|chr10 (22459071-22459458)