Ss1.1-Pig4-TMW8056F12.3
|
CTCCTGTTCTGCCTGGAATATGTTTCAGAATGAAAAGTGTCACCTCTTGGTAGAGCATGA
AACTCAGAAGCTGAAGGCCCTGGATGAAAGCCATAACCAGAACCTGAAAGAATGGCGGGA
CAAGCTTCGGCCACGCAAAAAGGTAACCCAATCTGGGCTGATGGGCTCTGCTCCTTGTTG
TGCCACAGGTGTCTGCCTGTAACCACAGCCTGCTGGGACTTTTTTGATGCTGAAATCAAT
AGTGCTCCTGCTGATATAGGTTGACTCTGGCATCAGGAAATAAATGTTCACCTGGTTCTC
TTATCTTGGCACATCCTGAGAGTCTGAAAGTGAACAATCAGTGTTGCCTCAGGCAAATGC
CTCATATCCCAGATTGCTTCATGAGGGCGCCTGCGCATAGGGGAGGCCTGGTGTTTGGAG
AGCTGGCATTGAGTTTTGCCTGTGGAGGCTGCCTCTTTCCAGAATTCCTTGTAGAACTGG
TCTATCATTAGTTACCTGGATGGCTGTTGGAACAGTGGCCCAGAGGGGATGACTTTCATT
CTGGAATAAGCATTCGTCTCCACTCCTGCATTTCAATCAGCAGCCTTGAGCTGCTGCCCA
TGTGTGGGGGGGCAAGGGAAATGACTGTACATTGGGGAATATTTTTAGAAAAATTCAGAT
TTCTATCAATAAGTAGAGAATATCCTGTAAGGTCAAGAAAGTGTTGCTTGGGTCACAATT
AACACAGACTGTGGCCTCAGACAAGTCTTACCCCTTGAACTTGGCTTTTGGGGGCTGTAA
GATGAAGATGACATTTCTTGCCTTAAACACAAGTGATAGTAAGCTGTTGCTCTTGGGCCA
CATGTGGCCCAGTACCTGTATTTACAAATAGTGTTTTATTGTAACACAGCCATACTTAAG
TATTTACATATTGTCTGCGGCCAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCCTGTTCTGCCTGGAATATGTTTCAGAATGAAAAGTGTCACCTCTTGGTAGAGCATGA
AACTCAGAAGCTGAAGGCCCTGGATGAAAGCCATAACCAGAACCTGAAAGAATGGCGGGA
CAAGCTTCGGCCACGCAAAAAGGTAACCCAATCTGGGCTGATGGGCTCTGCTCCTTGTTG
TGCCACAGGTGTCTGCCTGTAACCACAGCCTGCTGGGACTTTTTTGATGCTGAAATCAAT
AGTGCTCCTGCTGATATAGGTTGACTCTGGCATCAGGAAATAAATGTTCACCTGGTTCTC
TTATCTTGGCACATCCTGAGAGTCTGAAAGTGAACAATCAGTGTTGCCTCAGGCAAATGC
CTCATATCCCAGATTGCTTCATGAGGGCGCCTGCGCATAGGGGAGGCCTGGTGTTTGGAG
AGCTGGCATTGAGTTTTGCCTGTGGAGGCTGCCTCTTTCCAGAATTCCTTGTAGAACTGG
TCTATCATTAGTTACCTGGATGGCTGTTGGAACAGTGGCCCAGAGGGGATGACTTTCATT
CTGGAATAAGCATTCGTCTCCACTCCTGCATTTCAATCAGCAGCCTTGAGCTGCTGCCCA
TGTGTGGGGGGGCAAGGGAAATGACTGTACATTGGGGAATATTTTTAGAAAAATTCAGAT
TTCTATCAATAAGTAGAGAATATCCTGTAAGGTCAAGAAAGTGTTGCTTGGGTCACAATT
AACACAGACTGTGGCCTCAGACAAGTCTTACCCCTTGAACTTGGCTTTTGGGGGCTGTAA
GATGAAGATGACATTTCTTGCCTTAAACACAAGTGATAGTAAGCTGTTGCTCTTGGGCCA
CATGTGGCCCAGTACCTGTATTTACAAATAGTGTTTTATTGTAACACAGCCATACTTAAG
TATTTACATATTGTCTGCGGCCAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-166, gnl|bosTau2|chr20 (2814660-2814497) |
|
3-166, gnl|Hg17|chr5 (171412677-171412514) |
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3-166, gnl|Mm7|chr11 (32569840-32569975) |
| |
|
198-475, gnl|bosTau2|chr20 (2813698-2813391) |
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198-475, gnl|canFam2|chr4 (43390841-43390178) |
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198-475, gnl|hg17|chr5 (171406405-171407129) |
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198-475, gnl|Hg17|chr5 (171407132-171406825) |
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198-475, gnl|loxAfr1|scaffold_23010 (1297-576) |
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198-475, gnl|mm7|chr11 (32571937-32571295) |
|
198-475, gnl|panTro1|chr4 (178679961-178680684) |
|
198-475, gnl|rheMac2|chr6 (168421240-168421958) |
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198-475, gnl|rn3|chr10 (17478208-17477599) |
| |
|
492-920, gnl|bosTau2|chr20 (2813351-2812922) |
|
492-920, gnl|Hg17|chr5 (171406808-171406378) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-166, gnl|bosTau2|chr20 (2814660-2814497) |
|
3-166, gnl|Hg17|chr5 (171412677-171412514) |
|
3-166, gnl|Mm7|chr11 (32569840-32569975) |
| |
|
198-475, gnl|bosTau2|chr20 (2813698-2813391) |
|
198-475, gnl|canFam2|chr4 (43390841-43390178) |
|
198-475, gnl|hg17|chr5 (171406405-171407129) |
|
198-475, gnl|Hg17|chr5 (171407132-171406825) |
|
198-475, gnl|loxAfr1|scaffold_23010 (1297-576) |
|
198-475, gnl|mm7|chr11 (32571937-32571295) |
|
198-475, gnl|panTro1|chr4 (178679961-178680684) |
|
198-475, gnl|rheMac2|chr6 (168421240-168421958) |
|
198-475, gnl|rn3|chr10 (17478208-17477599) |
| |
|
492-920, gnl|bosTau2|chr20 (2813351-2812922) |
|
492-920, gnl|Hg17|chr5 (171406808-171406378) |
