Non-Coding RNA Search

Ss1.1-Pig4-TMW8056G01.5

Sequence:


               
               TCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCCATCCTTGGGTTTCTCAGAATT
ACAACTGAGGTCAACCCAGCAAACGTGTAAAGACCAAAGGGGAAAGGAAAAAAGAACCTA
CATGTGTGAGAGGCAAACACAGGCTTGTACTTCTACAGCCACCTGTTTACAGAAACTCAC
CTGACAGATGCCACCACAAGTGACCTGGTGTTGAAGGGGTCTCTGGCCATTGAATAGAAT
CTATTCTTGATGGGATGTGCTGGCCTCAGACAAGAGCATGAATCTTAACCTTTTGTTTAA
TCTAACCGAACCTGCAGAACCAATGGGAGGATAAAGCCAGGTGTTATTCCAGCACAGAAG
GGAAAGGCAAGCCAAGCATGCATATTCATCTCACTGGAGCCATAGAACACTCCCGACATC
CACAGAGGAAAGTGAGAAAGATAGACTAGATGATCCAATTCAACAAACATTTACAGAACG
CCTTCTGAGCCAGCAGTGGGGATATGTAAACAGTAGTCCCTGCCCTGAGGGGTCAGGGTC
TAGTGGAGGAGGCAAAGAGGCAAACAGAGGGAGGGAGTAAAAGGTTTCCCAGAGGAGATG
GCCACCAGGCTATGCCTAAAACAACAAATAACGTGCCAGTGAAGATTCCAGGTGGAACAG
AAAACCAACACGGTATGTTTGAGGGCACCCCAAGCCCCCAACCTCCAGGATAGAGGTTAA
AAAATCCACTCAGAGAGTTCCCGATGTGGCACAACAGGACGTCCTGGGAGCACTCGGATG
CAGGTTCAATCCCCCGCCCAGGATTTGGCTTTGCCACAGCTGCAGCTTAGGTCAAAACTA
TTTGAATCTGATCCCTGGCTCGGGAACTCCACATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGATCGCGACTGGAGTTTTTTTTTTTTTTTTTTTCCATCCTTGGGTTTCTCAGAATT
ACAACTGAGGTCAACCCAGCAAACGTGTAAAGACCAAAGGGGAAAGGAAAAAAGAACCTA
CATGTGTGAGAGGCAAACACAGGCTTGTACTTCTACAGCCACCTGTTTACAGAAACTCAC
CTGACAGATGCCACCACAAGTGACCTGGTGTTGAAGGGGTCTCTGGCCATTGAATAGAAT
CTATTCTTGATGGGATGTGCTGGCCTCAGACAAGAGCATGAATCTTAACCTTTTGTTTAA
TCTAACCGAACCTGCAGAACCAATGGGAGGATAAAGCCAGGTGTTATTCCAGCACAGAAG
GGAAAGGCAAGCCAAGCATGCATATTCATCTCACTGGAGCCATAGAACACTCCCGACATC
CACAGAGGAAAGTGAGAAAGATAGACTAGATGATCCAATTCAACAAACATTTACAGAACG
CCTTCTGAGCCAGCAGTGGGGATATGTAAACAGTAGTCCCTGCCCTGAGGGGTCAGGGTC
TAGTGGAGGAGGCAAAGAGGCAAACAGAGGGAGGGAGTAAAAGGTTTCCCAGAGGAGATG
GCCACCAGGCTATGCCTAAAACAACAAATAACGTGCCAGTGAAGATTCCAGGTGGAACAG
AAAACCAACACGGTATGTTTGAGGGCACCCCAAGCCCCCAACCTCCAGGATAGAGGTTAA
AAAATCCACTCAGAGAGTTCCCGATGTGGCACAACAGGACGTCCTGGGAGCACTCGGATG
CAGGTTCAATCCCCCGCCCAGGATTTGGCTTTGCCACAGCTGCAGCTTAGGTCAAAACTA
TTTGAATCTGATCCCTGGCTCGGGAACTCCACATGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               28-140, - strand, RNAz p=0.668129
               

               
               493-611, + strand, RNAz p=0.734239

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-140, - strand, RNAz p=0.668129
               

               
               493-611, + strand, RNAz p=0.734239

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               28-733, gnl|bosTau2|chr8 (43519907-43520614)
               

               
               28-733, gnl|canFam2|chr11 (72016173-72017109)
               

               
               28-733, gnl|echTel1|scaffold_316768 (4066-5218)
               

               
               28-733, gnl|hg17|chr9 (114749699-114750610)
               

               
               28-733, gnl|Hg17|chr9 (114750491-114749779)
               

               
               28-733, gnl|loxAfr1|scaffold_2706 (20912-19946)
               

               
               28-733, gnl|mm7|chr4 (63275449-63276275)
               

               
               28-733, gnl|Mm7|chr4 (63276157-63275531)
               

               
               28-733, gnl|oryCun1|scaffold_199248 (89247-88435)
               

               
               28-733, gnl|panTro1|chr11 (99294550-99295462)
               

               
               28-733, gnl|rheMac2|chr15 (21183900-21182957)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-733, gnl|bosTau2|chr8 (43519907-43520614)
               

               
               28-733, gnl|canFam2|chr11 (72016173-72017109)
               

               
               28-733, gnl|echTel1|scaffold_316768 (4066-5218)
               

               
               28-733, gnl|hg17|chr9 (114749699-114750610)
               

               
               28-733, gnl|Hg17|chr9 (114750491-114749779)
               

               
               28-733, gnl|loxAfr1|scaffold_2706 (20912-19946)
               

               
               28-733, gnl|mm7|chr4 (63275449-63276275)
               

               
               28-733, gnl|Mm7|chr4 (63276157-63275531)
               

               
               28-733, gnl|oryCun1|scaffold_199248 (89247-88435)
               

               
               28-733, gnl|panTro1|chr11 (99294550-99295462)
               

               
               28-733, gnl|rheMac2|chr15 (21183900-21182957)

	28-140, - strand, RNAz p=0.668129
	493-611, + strand, RNAz p=0.734239

	28-733, gnl\|bosTau2\|chr8 (43519907-43520614)
	28-733, gnl\|canFam2\|chr11 (72016173-72017109)
	28-733, gnl\|echTel1\|scaffold_316768 (4066-5218)
	28-733, gnl\|hg17\|chr9 (114749699-114750610)
	28-733, gnl\|Hg17\|chr9 (114750491-114749779)
	28-733, gnl\|loxAfr1\|scaffold_2706 (20912-19946)
	28-733, gnl\|mm7\|chr4 (63275449-63276275)
	28-733, gnl\|Mm7\|chr4 (63276157-63275531)
	28-733, gnl\|oryCun1\|scaffold_199248 (89247-88435)
	28-733, gnl\|panTro1\|chr11 (99294550-99295462)
	28-733, gnl\|rheMac2\|chr15 (21183900-21182957)