Non-Coding RNA Search

Ss1.1-Pig4-TMW8056H07.3

Sequence:


               
               GCGGCTCGAGGGGGACGCAGATTCCAGGTCCGTGCCGCCAGTCGGACCGGGAGGAAGAAG
GTTGAAGCGCTTAAGCCGGGAGTGGGTGGGTGAGATCGCAGCGCTGGGAAGGCGGGGGAG
CACAGCAGGGCGCAGTGTTCGGGGAGTTTCGAAGGTATCGGGTTTGGGGGTTCCTGGAAG
GAGGGGCGGGTGTCGGGCTGGAGAAAGGAAATGAGGGTGTCTCGAGGGAGACGGGGGGGC
GGGGAGGCGGGAGGAGGTCGGGAGGTCCAGCGTCGAAGGGGACTCGAAGGCCGGATGACG
CCTGGAGTAGCCATGGTGGAATGTGAGGGTGTGGGGGAGAGAACGCGGAGATGGGATTGG
CAGCAGGTAGGAGCATTGTGCGTGGCCGATGAGTGATGTGTGTGTGCGTGTTGAGTGTCC
GTGGCTTGTCAGGCGTGTGTGTGCGCGCGCGCGCGTGCGCTGGGAACGAGGCATGGCGTG
TGTCAGGTATGTGTGTGGCGTGTGTTTGATATGTGTGCGCGTGCTGTGTGTGGCAGACGG
GGAGAGCTGGGAGGTGAACAAGGGAGGCCCCATGGGGGAAGGGAGCTGGATGAGGAAGGC
TGAATATAGCGGCCGAGAGGAATGTGGCAAGGCGAGAAGGTAATACAGTATTACAGTCCA
TAGCAGGAGAGAAAGGACTAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGGGGGACGCAGATTCCAGGTCCGTGCCGCCAGTCGGACCGGGAGGAAGAAG
GTTGAAGCGCTTAAGCCGGGAGTGGGTGGGTGAGATCGCAGCGCTGGGAAGGCGGGGGAG
CACAGCAGGGCGCAGTGTTCGGGGAGTTTCGAAGGTATCGGGTTTGGGGGTTCCTGGAAG
GAGGGGCGGGTGTCGGGCTGGAGAAAGGAAATGAGGGTGTCTCGAGGGAGACGGGGGGGC
GGGGAGGCGGGAGGAGGTCGGGAGGTCCAGCGTCGAAGGGGACTCGAAGGCCGGATGACG
CCTGGAGTAGCCATGGTGGAATGTGAGGGTGTGGGGGAGAGAACGCGGAGATGGGATTGG
CAGCAGGTAGGAGCATTGTGCGTGGCCGATGAGTGATGTGTGTGTGCGTGTTGAGTGTCC
GTGGCTTGTCAGGCGTGTGTGTGCGCGCGCGCGCGTGCGCTGGGAACGAGGCATGGCGTG
TGTCAGGTATGTGTGTGGCGTGTGTTTGATATGTGTGCGCGTGCTGTGTGTGGCAGACGG
GGAGAGCTGGGAGGTGAACAAGGGAGGCCCCATGGGGGAAGGGAGCTGGATGAGGAAGGC
TGAATATAGCGGCCGAGAGGAATGTGGCAAGGCGAGAAGGTAATACAGTATTACAGTCCA
TAGCAGGAGAGAAAGGACTAGAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               435-549, - strand, RNAz p=0.999434
               

               
               564-682, - strand, RNAz p=0.64481

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               435-549, - strand, RNAz p=0.999434
               

               
               564-682, - strand, RNAz p=0.64481

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               9-682, gnl|bosTau2|chrX (1473551-1474232)
               

               
               9-682, gnl|canFam2|chrX (94396859-94397391)
               

               
               9-682, gnl|dasNov1|scaffold_16203 (51405-50921)
               

               
               9-682, gnl|hg17|chrX (118152710-118153332)
               

               
               9-682, gnl|Hg17|chrX (118152746-118153447)
               

               
               9-682, gnl|mm7|chrX (31358514-31359046)
               

               
               9-682, gnl|Mm7|chrX (31358537-31359155)
               

               
               9-682, gnl|panTro1|chrX (122167568-122168194)
               

               
               9-682, gnl|rheMac2|chrX (117504477-117505104)
               

               
               9-682, gnl|rn3|chrX (8278680-8278139)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-682, gnl|bosTau2|chrX (1473551-1474232)
               

               
               9-682, gnl|canFam2|chrX (94396859-94397391)
               

               
               9-682, gnl|dasNov1|scaffold_16203 (51405-50921)
               

               
               9-682, gnl|hg17|chrX (118152710-118153332)
               

               
               9-682, gnl|Hg17|chrX (118152746-118153447)
               

               
               9-682, gnl|mm7|chrX (31358514-31359046)
               

               
               9-682, gnl|Mm7|chrX (31358537-31359155)
               

               
               9-682, gnl|panTro1|chrX (122167568-122168194)
               

               
               9-682, gnl|rheMac2|chrX (117504477-117505104)
               

               
               9-682, gnl|rn3|chrX (8278680-8278139)

	435-549, - strand, RNAz p=0.999434
	564-682, - strand, RNAz p=0.64481

	9-682, gnl\|bosTau2\|chrX (1473551-1474232)
	9-682, gnl\|canFam2\|chrX (94396859-94397391)
	9-682, gnl\|dasNov1\|scaffold_16203 (51405-50921)
	9-682, gnl\|hg17\|chrX (118152710-118153332)
	9-682, gnl\|Hg17\|chrX (118152746-118153447)
	9-682, gnl\|mm7\|chrX (31358514-31359046)
	9-682, gnl\|Mm7\|chrX (31358537-31359155)
	9-682, gnl\|panTro1\|chrX (122167568-122168194)
	9-682, gnl\|rheMac2\|chrX (117504477-117505104)
	9-682, gnl\|rn3\|chrX (8278680-8278139)