Non-Coding RNA Search

Ss1.1-Pig4-TMW8056K13.3

Sequence:


               
               GGCGGCCACTGGAGAGGAGGCGCGCCGCTGCCGCCCGCCCGCCGTGTCCTCCACCGCTCC
TCGCACCCGGCCCCTGGTCGCCCCGTCACTCTGGTCCCAGGGGGCATGCGGCAGCCGCAG
GGGTCCCGGCTCCCCGGCTCGGCGGCGCGGGCCAGTGTGAGCGGATGTTCAGTTCTTCTC
CACAATGAATGAATGTTACTATGATAAGCAGATCGACTTTTTTTATAACAGGAGCAACAA
TGACATTGTTGATGAGTGGACAGGAACGAAGCTTGTCATCGTTTTGGGTGTCGGAACATT
TTTCTGCCTGTTTATCTTTTTTTCTAATTCCCTGGTCATCGCAGCAGTGATCAAAAACAG
AAAGTTTCATTTCCCCTTCTACTACCTGTTGGCTAACCTAGCTGCTGCAGATTTCTTTGC
TGGAATTGCCTATGTATACCTGATGTTTAACACTGGCCCAGCTACAAAAACTCTGACCAT
CAACCGCTGGTTTCTCCGCCAGGGGCTTTTGGATACTAGCCTAACGGCTTCCCTGACCAA
CTTGCTGGTTATTGCTGTGGAGAGGCACATGTCAGTCACAAGTATGCGGATCCACAGCAA
CCTGACCAAAAAGAGGGTGACGCTGCTCATTTTGTTCGTCTGGGTGATCGCCATCTTTAT
GGGAGCTGTCCCCACACTGGGCTGGAATTGCCTCTGTGACATCTCTTCCTGCTCTTCCCT
GGCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCCACTGGAGAGGAGGCGCGCCGCTGCCGCCCGCCCGCCGTGTCCTCCACCGCTCC
TCGCACCCGGCCCCTGGTCGCCCCGTCACTCTGGTCCCAGGGGGCATGCGGCAGCCGCAG
GGGTCCCGGCTCCCCGGCTCGGCGGCGCGGGCCAGTGTGAGCGGATGTTCAGTTCTTCTC
CACAATGAATGAATGTTACTATGATAAGCAGATCGACTTTTTTTATAACAGGAGCAACAA
TGACATTGTTGATGAGTGGACAGGAACGAAGCTTGTCATCGTTTTGGGTGTCGGAACATT
TTTCTGCCTGTTTATCTTTTTTTCTAATTCCCTGGTCATCGCAGCAGTGATCAAAAACAG
AAAGTTTCATTTCCCCTTCTACTACCTGTTGGCTAACCTAGCTGCTGCAGATTTCTTTGC
TGGAATTGCCTATGTATACCTGATGTTTAACACTGGCCCAGCTACAAAAACTCTGACCAT
CAACCGCTGGTTTCTCCGCCAGGGGCTTTTGGATACTAGCCTAACGGCTTCCCTGACCAA
CTTGCTGGTTATTGCTGTGGAGAGGCACATGTCAGTCACAAGTATGCGGATCCACAGCAA
CCTGACCAAAAAGAGGGTGACGCTGCTCATTTTGTTCGTCTGGGTGATCGCCATCTTTAT
GGGAGCTGTCCCCACACTGGGCTGGAATTGCCTCTGTGACATCTCTTCCTGCTCTTCCCT
GGCCCCCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q95L85_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q95L85_RABIT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-641, - strand, RNAz p=0.66977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-641, - strand, RNAz p=0.66977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               163-728, gnl|bosTau2|chr3 (44686248-44686813)
               

               
               163-728, gnl|Hg17|chr1 (85043843-85043281)
               

               
               163-728, gnl|Mm7|chr3 (146139106-146139671)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-728, gnl|bosTau2|chr3 (44686248-44686813)
               

               
               163-728, gnl|Hg17|chr1 (85043843-85043281)
               

               
               163-728, gnl|Mm7|chr3 (146139106-146139671)

	163-728, gnl\|bosTau2\|chr3 (44686248-44686813)
	163-728, gnl\|Hg17\|chr1 (85043843-85043281)
	163-728, gnl\|Mm7\|chr3 (146139106-146139671)