Non-Coding RNA Search

Ss1.1-Pig4-TMW8056P18.5

Sequence:


               
               AATATATCTCCAATCTATTCGTATTTGCAAATACAGGCTTTAAAAATGTTATTTGCTTCC
TGTCCCTCTTCAGAGAGGAGCTAATGAGGGGCAAGACCCCAGCAGGGCAGGGGTGGGTCC
AAGGAGGTGCTACTCTTTTCGGCTGATAAGACCAGAGGCCTGAGACTTGGGGTCCTTCAC
ACAAGTTAGCAGTGGGAAATCCAACTCCAGGTCACCAGCCCTGGGCCAGGTGGGGACAAA
AGTCTCTGGCAGAGAGCCGCAGGGAGGCTTGTGAAGCTGGGAAAGCTGAAGAGAAAATGA
ACGAAGGAGGCAGATGAGAGGAGGCTGGCAGGGTCTTGGGGTAGGAGTGGAGATGGGAGA
TACAATGGGGCATTTTCACCCAGCCTTGGGGTGGACTTGTCCACAAGTGCTTGGACAATT
CAAAAGGCTCAGAGTGGGAGTTCCTTTCATGGCTCAGCGGTTAATGAACCCAAGTAGGAA
CCATGAGGATATGGGTTCAATCCCTGGCTTCACTCAGTGGGTTAAGGATCTGGCAGTGCC
GGGAGCTATGGTATAGGTTGAATTGGAGCTGAAGCTACCAGCCTACACCACAGCCACAGC
AGCACCAGATCAGAGCTGCATCTGTGACCTACACCACAGCTCACAGCAACGCTGAATTCT
CAACCCACTGAGCAAGGCCAGGGATGGAAACTGCTTCCTCATGGATGCTAGTCAGATTCG
TTTCCACTGAGCCACAACGGGAACTCCTAGAAGGAGATTTTTGGTTACAAAATATAAAAT
GTTTAACTCAGATAAACTTTGCTTCAGAATTTCCTTTATTAGAGTCAGGGAGAAAAGGGA
GGCAATTCAGGTGGATATTTGAAATCTCAGTTAGCTACATTTCTTCCTACCATAATCTTT
CCATATTAAGTTTATTTAAAGTAGCTGAGCTTCAGGTAACAGTTTTTAATGAAAGTGGCT
GTTTTCCAGGAGGGGCCCATTAGAACTGAGTTTCTGGCATGATCTCTGTGATGGGTACAC
CAACCAAGACCAGCCTAGTGTTTTTGAGAGAAAGATAATGGGACAAAGGAAGAGGTGACA
AAAATGCCCTGTAGTGGCCTCCTTGATACCCCAAAGAGCTAAGCTGATGTATCTTTCACC
AGAGAGATATTCAGTTCCTGAAATTTGAGTGGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATATCTCCAATCTATTCGTATTTGCAAATACAGGCTTTAAAAATGTTATTTGCTTCC
TGTCCCTCTTCAGAGAGGAGCTAATGAGGGGCAAGACCCCAGCAGGGCAGGGGTGGGTCC
AAGGAGGTGCTACTCTTTTCGGCTGATAAGACCAGAGGCCTGAGACTTGGGGTCCTTCAC
ACAAGTTAGCAGTGGGAAATCCAACTCCAGGTCACCAGCCCTGGGCCAGGTGGGGACAAA
AGTCTCTGGCAGAGAGCCGCAGGGAGGCTTGTGAAGCTGGGAAAGCTGAAGAGAAAATGA
ACGAAGGAGGCAGATGAGAGGAGGCTGGCAGGGTCTTGGGGTAGGAGTGGAGATGGGAGA
TACAATGGGGCATTTTCACCCAGCCTTGGGGTGGACTTGTCCACAAGTGCTTGGACAATT
CAAAAGGCTCAGAGTGGGAGTTCCTTTCATGGCTCAGCGGTTAATGAACCCAAGTAGGAA
CCATGAGGATATGGGTTCAATCCCTGGCTTCACTCAGTGGGTTAAGGATCTGGCAGTGCC
GGGAGCTATGGTATAGGTTGAATTGGAGCTGAAGCTACCAGCCTACACCACAGCCACAGC
AGCACCAGATCAGAGCTGCATCTGTGACCTACACCACAGCTCACAGCAACGCTGAATTCT
CAACCCACTGAGCAAGGCCAGGGATGGAAACTGCTTCCTCATGGATGCTAGTCAGATTCG
TTTCCACTGAGCCACAACGGGAACTCCTAGAAGGAGATTTTTGGTTACAAAATATAAAAT
GTTTAACTCAGATAAACTTTGCTTCAGAATTTCCTTTATTAGAGTCAGGGAGAAAAGGGA
GGCAATTCAGGTGGATATTTGAAATCTCAGTTAGCTACATTTCTTCCTACCATAATCTTT
CCATATTAAGTTTATTTAAAGTAGCTGAGCTTCAGGTAACAGTTTTTAATGAAAGTGGCT
GTTTTCCAGGAGGGGCCCATTAGAACTGAGTTTCTGGCATGATCTCTGTGATGGGTACAC
CAACCAAGACCAGCCTAGTGTTTTTGAGAGAAAGATAATGGGACAAAGGAAGAGGTGACA
AAAATGCCCTGTAGTGGCCTCCTTGATACCCCAAAGAGCTAAGCTGATGTATCTTTCACC
AGAGAGATATTCAGTTCCTGAAATTTGAGTGGTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               201-319, + strand, RNAz p=0.737054

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-319, + strand, RNAz p=0.737054

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-438, gnl|bosTau2|chr1 (85174625-85175036)
               

               
               8-438, gnl|Hg17|chr3 (144976701-144976299)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-438, gnl|bosTau2|chr1 (85174625-85175036)
               

               
               8-438, gnl|Hg17|chr3 (144976701-144976299)

	8-438, gnl\|bosTau2\|chr1 (85174625-85175036)
	8-438, gnl\|Hg17\|chr3 (144976701-144976299)