Ss1.1-Pig4-TMW8057B04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGGGCCCACGAAGGCTTGTCCCCA ACACCTTTCATGAACTCAAATCTGATGGGAAAAACATCAGAGAGAGGCTCATTTTCCCTG TACAGCAGAGATACTGGATTACCAGGCTGTCAGTCTAGTCTCCTGAGGCAAGATCTTGGG CTTGGAAGCCCAGCACAGCTCTCTTCTTCAGGAAAACCTGGGACACCAGAAGCTGTGTGC ATTAGCTGCAAACAGTAACGTTTTCAAAATCAGCATGTATTGTGCTTATCCTGTCCCTGG AATGGGCAGCAATTCTTTGATGTATTACTATAATGGGAAAACGGTATATGCACCATCCCC AAATTCAGATGACTTTAACCGTGAATCTCCTAGTTATCCATCTCCCAAGCCACCAAGCAG TATGTTTGCTAGCACTTTTTTTATGCAAGATGGGACCCACAATTCTTCTGACATTTGGAG TTCATCAAATGGGATGAGCCAGCCTGGTTTTGGTGGAATTCTGGGGACCTCCACTTCCCA CATGTCTCAATCCAGTAGTTATGGCAGCCTTCATTCACATGACCGCTTGAGTTATCCTCC ACACTCAGTTTCACCAACAGACATAAACACAAGTCTTCCACCAATGTCCAGCTTCCATCG CGCCAGTACCAGCAGTTCACCTTACGTTGCTGCCTCACACACTCCTCCCATCAATGGATC AGATAGCATTCTAGGAACCAGAGGAAATGCTGCTGGAAGCTCACAGACAGGTGATGCACT TGGAAAAGCTTTGGCATCTATTTATTCTCCTGACCATACCAGCAGTAGTTTTCCATCAAA CCCATCAACACCAGTTGGATCACCCTCACCTCTCACAGGTACCAGTCAGTGGCCCAGACC TGGAGGGCAAGCTCCTTCGTCCCCAAGCTATGAAAATTCACTCCACTCCCTGCAATCTCG AATGGAGGATCGTTTGGACAGACTGGATGATGCTATCCATGTGCTGCGGAACCATGCCGT GGGACCTTCCACCAGTTTGCCTGCTGGTCACAGTGATATACACAGTTTATTGGGACCATC CCATAATGCACCAATTGGAAGCCTCAATTCAAACTATGGTGGATCAAGCCTTGTTACAAG CAGTCGATCTGCTTCAATGGTTGGAACTCATCGAGAAGACCCTGTCAGTCTCAATGGCAA TCATTCAGTCTTGTCTAGTACGGTCACTGCTTCAAGCACAGATTTGAACCATAAAACACA AGAAAGTTATAGAGGTGGCTTGCAAAGTCAGTCTGGAACTGTCGTTCCAACAGAAATCAA GACTGAAAACAAAGAGAAAGATGAAAACCTTCATGAACCTCCTTCATCAGATGACATGAA ATCAGATGATGAATCCTCCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCATTACAGTGATCACTTGAATGACAGTCGATTAGGGGCCCACGAAGGCTTGTCCCCA ACACCTTTCATGAACTCAAATCTGATGGGAAAAACATCAGAGAGAGGCTCATTTTCCCTG TACAGCAGAGATACTGGATTACCAGGCTGTCAGTCTAGTCTCCTGAGGCAAGATCTTGGG CTTGGAAGCCCAGCACAGCTCTCTTCTTCAGGAAAACCTGGGACACCAGAAGCTGTGTGC ATTAGCTGCAAACAGTAACGTTTTCAAAATCAGCATGTATTGTGCTTATCCTGTCCCTGG AATGGGCAGCAATTCTTTGATGTATTACTATAATGGGAAAACGGTATATGCACCATCCCC AAATTCAGATGACTTTAACCGTGAATCTCCTAGTTATCCATCTCCCAAGCCACCAAGCAG TATGTTTGCTAGCACTTTTTTTATGCAAGATGGGACCCACAATTCTTCTGACATTTGGAG TTCATCAAATGGGATGAGCCAGCCTGGTTTTGGTGGAATTCTGGGGACCTCCACTTCCCA CATGTCTCAATCCAGTAGTTATGGCAGCCTTCATTCACATGACCGCTTGAGTTATCCTCC ACACTCAGTTTCACCAACAGACATAAACACAAGTCTTCCACCAATGTCCAGCTTCCATCG CGCCAGTACCAGCAGTTCACCTTACGTTGCTGCCTCACACACTCCTCCCATCAATGGATC AGATAGCATTCTAGGAACCAGAGGAAATGCTGCTGGAAGCTCACAGACAGGTGATGCACT TGGAAAAGCTTTGGCATCTATTTATTCTCCTGACCATACCAGCAGTAGTTTTCCATCAAA CCCATCAACACCAGTTGGATCACCCTCACCTCTCACAGGTACCAGTCAGTGGCCCAGACC TGGAGGGCAAGCTCCTTCGTCCCCAAGCTATGAAAATTCACTCCACTCCCTGCAATCTCG AATGGAGGATCGTTTGGACAGACTGGATGATGCTATCCATGTGCTGCGGAACCATGCCGT GGGACCTTCCACCAGTTTGCCTGCTGGTCACAGTGATATACACAGTTTATTGGGACCATC CCATAATGCACCAATTGGAAGCCTCAATTCAAACTATGGTGGATCAAGCCTTGTTACAAG CAGTCGATCTGCTTCAATGGTTGGAACTCATCGAGAAGACCCTGTCAGTCTCAATGGCAA TCATTCAGTCTTGTCTAGTACGGTCACTGCTTCAAGCACAGATTTGAACCATAAAACACA AGAAAGTTATAGAGGTGGCTTGCAAAGTCAGTCTGGAACTGTCGTTCCAACAGAAATCAA GACTGAAAACAAAGAGAAAGATGAAAACCTTCATGAACCTCCTTCATCAGATGACATGAA ATCAGATGATGAATCCTCCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1273-1404, - strand, RNAz p=0.996784 | |
| 1273-1404, - strand, RNAz p=0.890965 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1273-1404, - strand, RNAz p=0.996784 | |
| 1273-1404, - strand, RNAz p=0.890965 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 228-346, gnl|bosTau2|chr10 (35194731-35194613) | |
| 228-346, gnl|Hg17|chr15 (55298965-55299083) | |
| 228-346, gnl|Mm7|chr9 (71930891-71930776) | |
| 589-735, gnl|bosTau2|chr10 (35182551-35182405) | |
| 589-735, gnl|Hg17|chr15 (55312201-55312347) | |
| 589-735, gnl|Mm7|chr9 (71918101-71917955) | |
| 937-1161, gnl|bosTau2|chr10 (35162862-35162640) | |
| 937-1161, gnl|Hg17|chr15 (55332738-55332960) | |
| 937-1161, gnl|Mm7|chr9 (71903141-71902919) | |
| 1273-1404, gnl|bosTau2|chr10 (35152398-35152267) | |
| 1273-1404, gnl|canFam2|chr30 (25448808-25448958) | |
| 1273-1404, gnl|danRer3|chrNA (39283703-39283854) | |
| 1273-1404, gnl|dasNov1|scaffold_81991 (3923-4068) | |
| 1273-1404, gnl|echTel1|scaffold_294280 (89150-89300) | |
| 1273-1404, gnl|galGal2|chr10 (8211139-8211289) | |
| 1273-1404, gnl|hg17|chr15 (55342583-55342733) | |
| 1273-1404, gnl|Hg17|chr15 (55342600-55342731) | |
| 1273-1404, gnl|mm7|chr9 (71893516-71893366) | |
| 1273-1404, gnl|Mm7|chr9 (71893497-71893366) | |
| 1273-1404, gnl|monDom2|scaffold_12 (35006667-35006814) | |
| 1273-1404, gnl|panTro1|chr16 (55691652-55691802) | |
| 1273-1404, gnl|rheMac2|chr7 (35589211-35589361) | |
| 1273-1404, gnl|rn3|chr8 (76344035-76343885) | |
| 1273-1404, gnl|xenTro1|scaffold_685 (620185-620324) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 228-346, gnl|bosTau2|chr10 (35194731-35194613) | |
| 228-346, gnl|Hg17|chr15 (55298965-55299083) | |
| 228-346, gnl|Mm7|chr9 (71930891-71930776) | |
| 589-735, gnl|bosTau2|chr10 (35182551-35182405) | |
| 589-735, gnl|Hg17|chr15 (55312201-55312347) | |
| 589-735, gnl|Mm7|chr9 (71918101-71917955) | |
| 937-1161, gnl|bosTau2|chr10 (35162862-35162640) | |
| 937-1161, gnl|Hg17|chr15 (55332738-55332960) | |
| 937-1161, gnl|Mm7|chr9 (71903141-71902919) | |
| 1273-1404, gnl|bosTau2|chr10 (35152398-35152267) | |
| 1273-1404, gnl|canFam2|chr30 (25448808-25448958) | |
| 1273-1404, gnl|danRer3|chrNA (39283703-39283854) | |
| 1273-1404, gnl|dasNov1|scaffold_81991 (3923-4068) | |
| 1273-1404, gnl|echTel1|scaffold_294280 (89150-89300) | |
| 1273-1404, gnl|galGal2|chr10 (8211139-8211289) | |
| 1273-1404, gnl|hg17|chr15 (55342583-55342733) | |
| 1273-1404, gnl|Hg17|chr15 (55342600-55342731) | |
| 1273-1404, gnl|mm7|chr9 (71893516-71893366) | |
| 1273-1404, gnl|Mm7|chr9 (71893497-71893366) | |
| 1273-1404, gnl|monDom2|scaffold_12 (35006667-35006814) | |
| 1273-1404, gnl|panTro1|chr16 (55691652-55691802) | |
| 1273-1404, gnl|rheMac2|chr7 (35589211-35589361) | |
| 1273-1404, gnl|rn3|chr8 (76344035-76343885) | |
| 1273-1404, gnl|xenTro1|scaffold_685 (620185-620324) |