Non-Coding RNA Search

Ss1.1-Pig4-TMW8057D23.3

Sequence:


               
               CTCGAGGAAAAGTTAATCAAGATAGCTCTTTTCCCTTACTCTTGGCAGATTTCTTCAGAG
GCTGAGGTGCATTATTTAATTCGAATGTGCCCTTCTTGCATGGTAGGGGAAGAAAAGAAA
CCTGTGGCTTAAAGTCCCTTTTTACTCAGAGAGGCATATAATGAATGCCTTCCTGTGTGC
AAAGGGGAGTAGGGAACCTCTTATCAATTACACGCATTGATGAGAGCAATGTGTTCTGCT
GGTCTGTGTGCCAGACTAGCCAGGAGGACTCAATCTTCCTCTGTTGCTCAACCTCCCTCT
TGGACATTAGGCATATCATTTCCCTCCTAGGTCACGTGTTTCTTTTACTTTTCTCCAAAG
TATCCGTTCCTAGCACAATAAAAGGAGGAAATGTGACTAATATTGATAAGTTCTATAAAA
TATGTTTCTCTTTTCTAAGTCTCTTGGATAACATACAGAACAACAGAGGTGGTCTTTTGC
TAAATGAATCTTGGCAAGTGGTTAAATGACTCACTCAGTAACTTCCGGTTTACTATATAA
TATAATAAACCACAATCTATGAATAAGCCAAATAGATAAAATGTCTTTCATTTGATGATT
CAGACTCAATCCAATAAAGCAGAATATTCCGTAGAGTTTATTTCCTGTAAGGGTAGGAGA
TAAAATTGATTTTCTCATTTTTTTCCCCATTTTTTTCCCTCCCAGTGTTTGCTACAGTTA
CTGCTTGTGAAAGACAACTAGAAATAGAATTTGCCATGAAATTTAAAACTTCACAAACCT
CACGGTGCTTCTTTTGAAGAAAAATGTAGAGTTGGTAGTCGGTATGAAATTCTGATGTGA
ACTCTTCCTTAGAACTTTACAGGATAAGAGGAAATGTGTGAAATGGAGATTGAACAATCT
TGTCTTGAAGCAGAAGACTCAAATGGAAGCTCCTGGCATTCCGCAATAAAATTCAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGGAAAAGTTAATCAAGATAGCTCTTTTCCCTTACTCTTGGCAGATTTCTTCAGAG
GCTGAGGTGCATTATTTAATTCGAATGTGCCCTTCTTGCATGGTAGGGGAAGAAAAGAAA
CCTGTGGCTTAAAGTCCCTTTTTACTCAGAGAGGCATATAATGAATGCCTTCCTGTGTGC
AAAGGGGAGTAGGGAACCTCTTATCAATTACACGCATTGATGAGAGCAATGTGTTCTGCT
GGTCTGTGTGCCAGACTAGCCAGGAGGACTCAATCTTCCTCTGTTGCTCAACCTCCCTCT
TGGACATTAGGCATATCATTTCCCTCCTAGGTCACGTGTTTCTTTTACTTTTCTCCAAAG
TATCCGTTCCTAGCACAATAAAAGGAGGAAATGTGACTAATATTGATAAGTTCTATAAAA
TATGTTTCTCTTTTCTAAGTCTCTTGGATAACATACAGAACAACAGAGGTGGTCTTTTGC
TAAATGAATCTTGGCAAGTGGTTAAATGACTCACTCAGTAACTTCCGGTTTACTATATAA
TATAATAAACCACAATCTATGAATAAGCCAAATAGATAAAATGTCTTTCATTTGATGATT
CAGACTCAATCCAATAAAGCAGAATATTCCGTAGAGTTTATTTCCTGTAAGGGTAGGAGA
TAAAATTGATTTTCTCATTTTTTTCCCCATTTTTTTCCCTCCCAGTGTTTGCTACAGTTA
CTGCTTGTGAAAGACAACTAGAAATAGAATTTGCCATGAAATTTAAAACTTCACAAACCT
CACGGTGCTTCTTTTGAAGAAAAATGTAGAGTTGGTAGTCGGTATGAAATTCTGATGTGA
ACTCTTCCTTAGAACTTTACAGGATAAGAGGAAATGTGTGAAATGGAGATTGAACAATCT
TGTCTTGAAGCAGAAGACTCAAATGGAAGCTCCTGGCATTCCGCAATAAAATTCAAATAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               87-245, - strand, RNAz p=0.988733
               

               
               481-595, + strand, RNAz p=0.855977

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-245, - strand, RNAz p=0.988733
               

               
               481-595, + strand, RNAz p=0.855977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-958, gnl|bosTau2|chr28 (18930583-18931535)
               

               
               8-958, gnl|Hg17|chr8 (77692090-77691125)
               

               
               8-958, gnl|Mm7|chr3 (5152208-5151283)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-958, gnl|bosTau2|chr28 (18930583-18931535)
               

               
               8-958, gnl|Hg17|chr8 (77692090-77691125)
               

               
               8-958, gnl|Mm7|chr3 (5152208-5151283)

	87-245, - strand, RNAz p=0.988733
	481-595, + strand, RNAz p=0.855977

	8-958, gnl\|bosTau2\|chr28 (18930583-18931535)
	8-958, gnl\|Hg17\|chr8 (77692090-77691125)
	8-958, gnl\|Mm7\|chr3 (5152208-5151283)