Ss1.1-Pig4-TMW8057H19.3
|
GGGTTTCTGAGGCCGGTGGGCGAGGCAGCATCCACAGTGTTAGTCCAACAAGCTGGGCAG
TGTTGTCAGCCTCGTGTTTTGCCAGCAACGGTCTGGAAGGGCCAGGGAGGCTCTGGGCCT
GAGCCCAGGCCTCCAGCTTGGCTCAGCTGCTGAATTTTTCCTTGAGGCTCTTTGATGGGC
ATCCCAGCAAGGGTCCTGTGGCGGGTAGCAGGAGGGAAAGCATCAGGTGGCCTTAGCAGA
AGGGGGACAAAGAGGGCATTTCAAGAACCATCTCAGGCACTTCTGCATTACGGAGGCCCC
GCCCTTCCTGAACCCTCTGAAGATGCCAGGGATGGGCAGAGGTCGGGGGAGATGCCCAGA
CTCAGGGGTCAGGAGCGGGGCCGTGCAGGGAATGGAGCGGCAAGTTCAGACAGAGGAAAG
GGGCTCAGGTCAAGGTCAGCCATGCTGCTGGCTGGGGTCTGGGCGGACACAATCTTTTTT
TGGCTTCGCCCAAATCCAAATGCCCCACCAGAGAGGATGTGTGTGAGGAGCAAGAAATAT
TGAATCCAATTAAGAGAGAAAAATAATAATAAAAAAAATTCTCTTGGATAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGTTTCTGAGGCCGGTGGGCGAGGCAGCATCCACAGTGTTAGTCCAACAAGCTGGGCAG
TGTTGTCAGCCTCGTGTTTTGCCAGCAACGGTCTGGAAGGGCCAGGGAGGCTCTGGGCCT
GAGCCCAGGCCTCCAGCTTGGCTCAGCTGCTGAATTTTTCCTTGAGGCTCTTTGATGGGC
ATCCCAGCAAGGGTCCTGTGGCGGGTAGCAGGAGGGAAAGCATCAGGTGGCCTTAGCAGA
AGGGGGACAAAGAGGGCATTTCAAGAACCATCTCAGGCACTTCTGCATTACGGAGGCCCC
GCCCTTCCTGAACCCTCTGAAGATGCCAGGGATGGGCAGAGGTCGGGGGAGATGCCCAGA
CTCAGGGGTCAGGAGCGGGGCCGTGCAGGGAATGGAGCGGCAAGTTCAGACAGAGGAAAG
GGGCTCAGGTCAAGGTCAGCCATGCTGCTGGCTGGGGTCTGGGCGGACACAATCTTTTTT
TGGCTTCGCCCAAATCCAAATGCCCCACCAGAGAGGATGTGTGTGAGGAGCAAGAAATAT
TGAATCCAATTAAGAGAGAAAAATAATAATAAAAAAAATTCTCTTGGATAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
88-198, BX091346 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGp998G142009 ;
(emb|BX091346.1|), blast E-value=2e-16, identity=85.59% |
|
40-111, 32093 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW347823.1|),
blast E-value=2e-31, identity=100% |
|
40-195, 464283 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI683047.1|),
blast E-value=0, identity=91.03% |
|
88-198, UI-E-EJ0-ahv-e-06-0-UI.s2 UI-E-EJ0 Homo sapiens cDNA clone
(gb|BU740371.1|), blast E-value=2e-16, identity=85.59% |
|
88-198, UI-H-FH1-bfh-p-17-0-UI.s1 NCI_CGAP_FH1 Homo sapiens cDNA clone
(gb|CA429077.1|), blast E-value=2e-16, identity=85.59% |
|
55-198, GL-Cf-4994 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN748202.1|), blast E-value=2e-37, identity=88.89% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
88-198, BX091346 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGp998G142009 ;
(emb|BX091346.1|), blast E-value=2e-16, identity=85.59% |
|
40-111, 32093 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW347823.1|),
blast E-value=2e-31, identity=100% |
|
40-195, 464283 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI683047.1|),
blast E-value=0, identity=91.03% |
|
88-198, UI-E-EJ0-ahv-e-06-0-UI.s2 UI-E-EJ0 Homo sapiens cDNA clone
(gb|BU740371.1|), blast E-value=2e-16, identity=85.59% |
|
88-198, UI-H-FH1-bfh-p-17-0-UI.s1 NCI_CGAP_FH1 Homo sapiens cDNA clone
(gb|CA429077.1|), blast E-value=2e-16, identity=85.59% |
|
55-198, GL-Cf-4994 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue
(gb|DN748202.1|), blast E-value=2e-37, identity=88.89% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
